Agents.SchedulersModule
Schedulers

Submodule containing all predefined schedulers of Agents.jl that can be used with StandardABM.

Schedulers have a very simple interface. They are functions that take as an input the ABM and return an iterator over agent IDs: f(model) -> iterator. Notice that this iterator can be non-allocated specialized type or just a standard vector of IDs.

Schedulers have many purposes:

  1. Can be given in StandardABM as a default scheduler. This functionality is only meaningful when the agent_step! has been configured. The function schedule(model) will return the scheduled IDs.
  2. Can be used by a user when performing manual scheduling in case agent_step! has not been configured.
  3. Can be used to globally filter agents by type/property/whatever. For example, one can use the ByProperty scheduler to simply obtain the list of all agent IDs that satisfy a particular property.

See also Advanced scheduling for making more advanced schedulers.

Agents.Schedulers.ByKindType
Schedulers.ByKind(agent_kinds; shuffle_kinds = true, shuffle_agents = true)

A scheduler useful only for mixed agent models using the @multiagent macro.

  • agent_kinds is a Tuple of all valid agent kinds e.g. (:B, :A, :C).

Keyword arguments

  • shuffle_kinds = true groups by agent kind, but randomizes the kind order. Otherwise returns agent IDs grouped in order of appearance in agent_kinds.
  • shuffle_agents = true randomizes the order of agents within each group, false returns the default order of the container (equivalent to Schedulers.fastest).
Agents.Schedulers.ByPropertyType
Schedulers.ByProperty(property)

A scheduler that orders agent IDs by their property, with agents with greater property being ordered first. property can be a Symbol, which just dictates which field of the agents to compare, or a function which inputs an agent and outputs a real number.

Agents.Schedulers.ByTypeType
Schedulers.ByType(shuffle_types::Bool, shuffle_agents::Bool, agent_union)

A scheduler useful only for mixed agent models using Union types.

  • Setting shuffle_types = true groups by agent type, but randomizes the type order. Otherwise returns agent IDs grouped in order of appearance in the Union.
  • shuffle_agents = true randomizes the order of agents within each group, false returns the default order of the container (equivalent to Schedulers.fastest).
  • agent_union is a Union of all valid agent types (as passed to ABM)
Schedulers.ByType((C, B, A), shuffle_agents::Bool)

A scheduler that orders agent IDs by type in specified order (since Unions are not order preserving). shuffle_agents = true randomizes the order of agents within each group.

Agents.Schedulers.RandomlyType
Schedulers.Randomly()

A scheduler that randomly orders all agent IDs. Different random ordering is used at each different step.

Agents.Schedulers.fastestMethod
Schedulers.fastest

A scheduler that orders all agent IDs in the fastest way possible, which is the default order dictated by the agent container.

Agents.OSMModule
OSM

Submodule for functionality related to OpenStreetMapSpace. See the docstring of the space for more info.

Agents.OSM.OpenStreetMapPathType
OpenStreetMapPath

This struct stores information about the path of an agent via route planning. It also serves as developer's docs for some of the internals of OpenStreetMapSpace.

Storage of map nodes

Each node has a node ID from the OpenStreetMap API. The map is stored as a Graph by LightOSM, and hence each node also has a vertex index corresponding to the vertex representing it in this graph. Hence each node can be referred to by either the node ID or its graph index, and we can convert either way, using the function LightOSM.index_to_node. We use graph vertex indices consistently in OSMSpace, because we access graph data more often than OSM data.

Fields of OpenStreetMapPath

  • route::Vector{Int}: Vertex indices along the planned route. They are actually stored in inverse sequence, from dest to start, because it is more efficient to pop the off this way while traversing the route.
  • start::Tuple{Int,Int,Float64}: Initial position of the agent.
  • dest::Tuple{Int,Int,Float64}: Destination.
  • return_route::Vector{Int}: Same as route but for the return trip.
  • has_to_return::Bool: true if there is an actual return trip.
Agents.OSM.OpenStreetMapSpaceType
OpenStreetMapSpace(path::AbstractString; kwargs...)

Create a space residing on the Open Street Map (OSM) file provided via path. This space represents the underlying map as a continuous entity choosing accuracy over performance. The map is represented as a graph, consisting of nodes connected by edges. Nodes are not necessarily intersections, and there may be multiple nodes on a road joining two intersections. Agents move along the available roads of the map using routing, see below.

The functionality related to Open Street Map spaces is in the submodule OSM. An example of its usage can be found in Zombie Outbreak in a City.

The OSMAgent

The base properties for an agent residing on an OSMSpace are as follows:

mutable struct Agent <: AbstractAgent
    id::Int
    pos::Tuple{Int,Int,Float64}
end

Current position tuple is represented as (first intersection index, second intersection index, distance travelled). The indices are the indices of the nodes of the graph that internally represents the map. Functions like OSM.nearest_node or OSM.nearest_road can help find those node indices from a (lon, lat) real world coordinate. The distance travelled is in the units of weight_type. This ensures that the map is a continuous kind of space, as an agent can truly be at any possible point on an existing road.

Use OSMAgent for convenience.

Obtaining map files

Maps files can be downloaded using the functions provided by LightOSM.jl. Agents.jl also re-exports OSM.download_osm_network, the main function used to download maps and provides a test map in OSM.test_map. An example usage to download the map of London to "london.json":

OSM.download_osm_network(
    :place_name;
    place_name = "London",
    save_to_file_location = "london.json"
)

The length of an edge between two nodes is specified in the units of the map's weight_type as listed in the documentation for LightOSM.OSMGraph. The possible weight_types are:

  • :distance: The distance in kilometers of an edge
  • :time: The time in hours to travel along an edge at the maximum speed allowed on that road
  • :lane_efficiency: Time scaled by number of lanes

The default weight_type used is :distance.

All kwargs are propagated to LightOSM.graph_from_file.

Routing with OSM

You can use plan_route! or plan_random_route!. To actually move along a planned route use move_along_route!.

Agents.OSM.closest_node_on_edgeMethod
OSM.closest_node_on_edge(a::Tuple{Int,Int,Float64}, model::ABM{<:OpenStreetMapSpace})

Return the node that the given point is closest to on its edge

Agents.OSM.distanceMethod
OSM.distance(pos_1, pos_2, model::ABM{<:OpenStreetMapSpace}; kwargs...)

Return the distance between the two positions along the shortest path joining them in the given model. Return Inf if no such path exists.

All keywords are passed to LightOSM.shortest_path.

Agents.OSM.get_geolocMethod
OSM.get_geoloc(pos::Int, model::ABM{<:OpenStreetMapSpace})

Return GeoLocation corresponding to node pos.

Agents.OSM.get_reverse_directionMethod
OSM.get_reverse_direction(pos::Tuple{Int,Int,Float64}, model::ABM{<:OpenStreetMapSpace})

Return the same position, but with pos[1] and pos[2] swapped and pos[3] updated.

Agents.OSM.lonlatMethod
OSM.lonlat(pos, model)
OSM.lonlat(agent, model)

Return (longitude, latitude) of current road or intersection position.

Agents.OSM.nearest_nodeMethod
OSM.nearest_node(lonlat::Tuple{Float64,Float64}, model::ABM{<:OpenStreetMapSpace})

Return the nearest intersection position to (longitude, latitude). Quicker, but less precise than OSM.nearest_road.

Agents.OSM.nearest_roadMethod
OSM.nearest_road(lonlat::Tuple{Float64,Float64}, model::ABM{<:OpenStreetMapSpace})

Return a location on a road nearest to (longitude, latitude). Slower, but more precise than OSM.nearest_node.

Agents.OSM.plan_random_route!Method
OSM.plan_random_route!(agent, model::ABM{<:OpenStreetMapSpace}; kwargs...) → success

Plan a new random route for the agent, by selecting a random destination and planning a route from the agent's current position. Overwrite any existing route.

The keyword limit = 10 specifies the limit on the number of attempts at planning a random route, as no connection may be possible given the random destination. Return true if a route was successfully planned, false otherwise. All other keywords are passed to plan_route!

Agents.OSM.random_road_positionMethod
OSM.random_road_position(model::ABM{<:OpenStreetMapSpace})

Similar to random_position, but rather than providing only intersections, this method returns a location somewhere on a road heading in a random direction.

Agents.OSM.road_lengthMethod
OSM.road_length(start::Int, finish::Int, model)
OSM.road_length(pos::Tuple{Int,Int,Float64}, model)

Return the road length between two intersections. This takes into account the direction of the road, so OSM.road_length(pos_1, pos_2, model) may not be the same as OSM.road_length(pos_2, pos_1, model). Units of the returned quantity are as specified by the underlying graph's weight_type. If start and finish are the same or pos[1] and pos[2] are the same, then return 0.

Agents.OSM.route_lengthMethod
OSM.route_length(agent, model::ABM{<:OpenStreetMapSpace})

Return the length of the route planned for the given agent, correctly taking into account the amount of route already traversed by the agent. Return 0 if is_stationary(agent, model).

Agents.OSM.same_positionMethod
OSM.same_position(a::Tuple{Int,Int,Float64}, b::Tuple{Int,Int,Float64}, model::ABM{<:OpenStreetMapSpace})

Return true if the given positions a and b are (approximately) identical

Agents.OSM.same_roadMethod
OSM.same_road(a::Tuple{Int,Int,Float64}, b::Tuple{Int,Int,Float64})

Return true if both points lie on the same road of the graph

Agents.OSM.test_mapMethod
OSM.test_map()

Download a small test map of Göttingen as an artifact. Return a path to the downloaded file.

Using this map requires network_type = :none to be passed as a keyword to OSMSpace. The unit of distance used for this map is :time.

Agents.move_along_route!Method
move_along_route!(agent, model::ABM{<:OpenStreetMapSpace}, distance::Real) → remaining

Move an agent by distance along its planned route. Units of distance are as specified by the underlying graph's weight_type. If the provided distance is greater than the distance to the end of the route, return the remaining distance. Otherwise, return 0. 0 is also returned if is_stationary(agent, model).

Agents.plan_route!Method
plan_route!(agent, dest, model::ABM{<:OpenStreetMapSpace};
            return_trip = false, kwargs...) → success

Plan a route from the current position of agent to the location specified in dest, which can be an intersection or a point on a road. Overwrite any existing route.

If return_trip = true, a route will be planned from start ⟶ finish ⟶ start. All other keywords are passed to LightOSM.shortest_path.

Return true if a path to dest exists, and hence the route planning was successful. Otherwise return false. When dest is an invalid position, i.e. if it contains node indices that are not in the graph, or if the distance along the road is not between zero and the length of the road, return false as well.

Specifying return_trip = true also requires the existence of a return path for a route to be planned.

Agents.AgentsIOModule
AgentsIO

Submodule containing functionality for serialization and deserialization of model data to and from files.

Agents.AgentsIO.dump_to_csvFunction
AgentsIO.dump_to_csv(filename, agents [, fields]; kwargs...)

Dump agents to the CSV file specified by filename. agents is any iterable sequence of types, such as from allagents. fields is an iterable sequence of Symbols specifying which fields of each agent are dumped. If not explicitly specified, it is automatically inferred using eltype(agents). All kwargs... are forwarded to CSV.write.

All Tuple{...} fields are flattened to multiple columns suffixed by _1, _2... similarly to AgentsIO.populate_from_csv!

For example,

struct Foo <: AbstractAgent
    id::Int
    pos::NTuple{2,Int}
    foo::Tuple{Int,String}
end

model = StandardABM(Foo, ...)
...
AgentsIO.dump_to_csv("test.csv", allagents(model))

The resultant "test.csv" file will contain the following columns: id, pos_1, pos_2, foo_1, foo_2.

Agents.AgentsIO.from_serializableMethod
AgentsIO.from_serializable(t; kwargs...)

Given a value in its serializable form, return the original version. This defaults to the value itself, unless a more specific method is defined. Define a method for this function and for AgentsIO.to_serializable if you need custom serialization for model properties. This also enables passing keyword arguments to AgentsIO.load_checkpoint and having access to them through kwargs.

Refer to AgentsIO.to_serializable for more info.

Agents.AgentsIO.load_checkpointMethod
AgentsIO.load_checkpoint(filename; kwargs...)

Load the model saved to the file specified by filename.

Keywords

  • scheduler = Schedulers.fastest specifies what scheduler should be used for the model.
  • warn = true can be used to disable warnings from type checks on the agent type.

ContinuousSpace specific:

  • update_vel! specifies a function that should be used to update each agent's velocity before it is moved. Refer to ContinuousSpace for details.

OpenStreetMapSpace specific:

  • map is a path to the OpenStreetMap to be used for the space. This is a required parameter if the space is OpenStreetMapSpace.
  • use_cache = false, trim_to_connected_graph = true refer to OpenStreetMapSpace
Agents.AgentsIO.populate_from_csv!Function
AgentsIO.populate_from_csv!(model, filename [, agent_type, col_map]; row_number_is_id, kwargs...)

Populate the given model using CSV data contained in filename. Use agent_type to specify the type of agent to create (In the case of multi-agent models) or a function that returns an agent to add to the model. The CSV row is splatted into the agent_type constructor/function.

col_map is a Dict{Symbol,Int} specifying a mapping of keyword-arguments to row number. If col_map is specified, the specified data is splatted as keyword arguments.

The keyword row_number_is_id = false specifies whether the row number will be passed as the first argument (or as id keyword) to agent_type.

Any other keyword arguments are forwarded to CSV.Rows. If the types keyword is not specified and agent_type is a struct, then the mapping from struct field to type will be used. Tuple{...} fields will be suffixed with _1, _2, ... similarly to AgentsIO.dump_to_csv

For example,

struct Foo <: AbstractAgent
    id::Int
    pos::NTuple{2,Int}
    foo::Tuple{Int,String}
end

model = StandardABM(Foo, ...)
AgentsIO.populate_from_csv!(model, "test.csv")

Here, types will be inferred to be

Dict(
    :id => Int,
    :pos_1 => Int,
    :pos_2 => Int,
    :foo_1 => Int,
    :foo_2 => String,
)

It is not necessary for all these fields to be present as columns in the CSV. Any column names that match will be converted to the appropriate type. There should exist a constructor for Foo taking the appropriate combination of fields as parameters.

If "test.csv" contains the following columns: pos_1, pos_2, foo_1, foo_2, then model can be populated as AgentsIO.populate_from_csv!(model, "test.csv"; row_number_is_id = true).

Agents.AgentsIO.save_checkpointMethod
AgentsIO.save_checkpoint(filename, model::ABM)

Write the entire model to file specified by filename. The following points should be considered before using this functionality:

  • OpenStreetMap data is not saved. The path to the map should be specified when loading the model using the map keyword of AgentsIO.load_checkpoint.
  • Functions are not saved, including stepping functions, schedulers, and update_vel!. The last two can be provided to AgentsIO.load_checkpoint using the appropriate keyword arguments.
Agents.AgentsIO.to_serializableMethod
AgentsIO.to_serializable(t)

Return the serializable form of the passed value. This defaults to the value itself, unless a more specific method is defined. Define a method for this function and for AgentsIO.from_serializable if you need custom serialization for model properties. This also enables passing keyword arguments to AgentsIO.load_checkpoint and having access to them during deserialization of the properties. Some possible scenarios where this may be required are:

  • Your properties contain functions (or any type not supported by JLD2.jl). These may not be (de)serialized correctly. This could result in checkpoint files that cannot be loaded back in, or contain reconstructed types that do not retain their data/functionality.
  • Your properties contain data that can be recalculated during deserialization. Omitting such properties can reduce the size of the checkpoint file, at the expense of some extra computation at deserialization.

If your model properties do not fall in the above scenarios, you do not need to use this function.

This function, and AgentsIO.from_serializable is not called recursively on every type/value during serialization. The final serialization functionality is enabled by JLD2.jl. To define custom serialization for every occurrence of a specific type (such as agent structs), refer to the Custom Serialization section of JLD2.jl documentation.

Agents.AgentsModule

Agents.jl

CI codecov Aqua QA Package Downloads

Agents.jl is a pure Julia framework for agent-based modeling (ABM): a computational simulation methodology where autonomous agents react to their environment (including other agents) given a predefined set of rules. Some major highlights of Agents.jl are:

  1. It is fast (faster than MASON, NetLogo, or Mesa)
  2. It is simple: has a very short learning curve and requires writing minimal code
  3. Has an extensive interface of thousands of out-of-the box possible agent actions
  4. Straightforwardly allows simulations on Open Street Maps
  5. Allows both traditional discrete-time ABM simulations as well as continuous time "event queue based" ABM simulations.

More information and an extensive list of features can be found in the documentation, which you can either find online or build locally by running the docs/make.jl file.

Citation

If you use this package in a publication, or simply want to refer to it, please cite the paper below:

@article{Agents.jl,
  doi = {10.1177/00375497211068820},
  url = {https://doi.org/10.1177/00375497211068820},
  year = {2022},
  month = jan,
  publisher = {{SAGE} Publications},
  pages = {003754972110688},
  author = {George Datseris and Ali R. Vahdati and Timothy C. DuBois},
  title = {Agents.jl: a performant and feature-full agent-based modeling software of minimal code complexity},
  journal = {{SIMULATION}},
  volume = {0},
  number = {0},
}
Agents.ABMObservableType
ABMObservable(model; adata, mdata, when) → abmobs

abmobs contains all information necessary to step an agent based model interactively, as well as collect data while stepping interactively. ABMObservable also returned by abmplot.

Calling Agents.step!(abmobs, t) will step the model for t time and collect data as in Agents.run!.

The fields abmobs.model, abmobs.adf, abmobs.mdf are observables that contain the AgentBasedModel, and the agent and model dataframes with collected data. Data are collected as described in Agents.run! using the adata, mdata, when keywords. All three observables are updated on stepping (when it makes sense).

All plotting and interactivity should be defined by lifting these observables.

Agents.AbstractAgentType
YourAgentType <: AbstractAgent

Agents participating in Agents.jl simulations are instances of user-defined types that are subtypes of AbstractAgent.

Your agent type(s) must have the id::Int field as first field. If any space is used (see Available spaces), a pos field of appropriate type is also mandatory. The core model structure, and each space, may also require additional fields that may, or may not, be communicated as part of the public API.

The @agent macro ensures that all of these constrains are in place and hence it is the the only supported way to create agent types.

Agents.AbstractGridSpaceType
AbstractGridSpace{D,P}

Abstract type for grid-based spaces. All instances have a field stored_ids which is simply the array whose size is the same as the size of the space and whose cartesian indices are the possible positions in the space.

Furthermore, all spaces should have at least the fields

  • offsets_within_radius
  • offsets_within_radius_no_0

which are Dict{Float64,Vector{NTuple{D,Int}}}, mapping radii to vector of indices within each radius.

D is the dimension and P is whether the space is periodic (boolean).

Agents.AbstractSpaceType
AbstractSpace

Supertype of all concrete space implementations for Agents.jl.

Agents.AgentBasedModelType
AgentBasedModel

AgentBasedModel is the abstract supertype encompassing models in Agents.jl. All models are some concrete implementation of AgentBasedModel and follow its interface (see below). ABM is an alias to AgentBasedModel.

Available concrete implementations

It is also straightforward to create your own versions of AgentBasedModel, see the corresponding entry in the developer documentation.

Interface of AgentBasedModel

  • model[id] returns the agent with given id.
  • abmproperties(model) returns the properties container storing model-level properties.
  • model.property: If the model properties is a dictionary with key type Symbol, or if it is a composite type (struct), then the syntax model.property will return the model property with key :property.
  • abmtime(model) will return the current time of the model. All models start from time 0 and time is incremented as the model is step!-ped.
  • abmrng(model) will return the random number generator of the model. It is strongly recommended to give abmrng(model) to all calls to rand and similar functions, so that reproducibility can be established in your modelling workflow.
  • allids(model)/allagents(model) returns an iterator over all IDs/agents in the model.
  • hasid(model, id) returns true if the model has an agent with given id.

AgentBasedModel defines an extendable interface composed of the above syntax as well as a few more additional functions described in the Developer's Docs. Following this interface you can implement new variants of an AgentBasedModel. The interface allows instances of AgentBasedModel to be used with any of the API. For example, functions such as random_agent, move_agent! or add_agent do not need to be implemented manually but work out of the box provided the AgentBasedModel interface is followed.

Agents.AgentEventType
AgentEvent(; action!, propensity, kinds, timing)

An event instance that can be given to EventQeueABM.

  • action! = dummystep: is the function action!(agent, model) that will act on the agent the event corresponds to. This keyword is mandatory. The action! function may call add_event! to generate new events, regardless of the automatic generation of events by Agents.jl.
  • propensity = 1.0: it can be either a constant real number, or a function propensity(agent, model) that returns the propensity of the event. This function is called when a new event is generated for the given agent.
  • kinds = nothing: the kinds of agents the action! function can be applied to. As EventQueueABM only works with @multiagent, the agent kinds are Symbols. The default value nothing means that the action! may apply to any kind of agents. Otherwise, it must a be tuple of Symbols representing the agent kinds, such as (:Rock, :Paper, :Scissors). A tuple must still be used if the action applies to only one kind of agent, such as (:Rock, ) (notice the closing comma).
  • timing = Agents.exp_propensity: decides how long after its generation the event should trigger. By default the time is a randomly sampled time from an exponential distribution with parameter the total propensity of all applicable events to the agent. I.e., by default the "Gillespie" algorithm is used to time the events. Alternatively, it can be a custom function timing(agent, model, propensity) which will return the time.

Notice that when using the add_event! function, propensity, timing are ignored if event_idx and t are given.

Agents.ArccosMethod
Arccos(a, b)

Create a ContinuousUnivariateDistribution corresponding to acos(Uniform(a,b)).

Agents.ContinuousAgentType
ContinuousAgent{D,T} <: AbstractAgent

The minimal agent struct for usage with D-dimensional ContinuousSpace. It has the additional fields pos::SVector{D,T}, vel::SVector{D,T} where T can be any AbstractFloat type. See also @agent.

Agents.ContinuousSpaceMethod
ContinuousSpace(extent::NTuple{D, <:Real}; kwargs...)

Create a D-dimensional ContinuousSpace in range 0 to (but not including) extent. Your agent positions (field pos) must be of type SVector{D, <:Real}, and it is strongly recommend that agents also have a field vel::SVector{D, <:Real} to use in conjunction with move_agent!. Use ContinuousAgent for convenience.

ContinuousSpace is a representation of agent dynamics on a continuous medium where agent position, orientation, and speed, are true floats. In addition, support is provided for representing spatial properties in a model that contains a ContinuousSpace. Spatial properties (which typically are contained in the model properties) can either be functions of the position vector, f(pos) = value, or AbstractArrays, representing discretizations of spatial data that may not be available in analytic form. In the latter case, the position is automatically mapped into the discretization represented by the array. Use get_spatial_property to access spatial properties in conjunction with ContinuousSpace.

See also Continuous space exclusives on the online docs for more functionality. An example using continuous space is the Flocking model.

Distance specification

Distances specified by r in functions like nearby_ids are always based on the Euclidean distance between two points in ContinuousSpace.

In ContinuousSpace nearby_* searches are accelerated using a grid system, see discussion around the keyword spacing below. By default, nearby_* have keyword search set to :approximate, which means that they doesn't do an exact search, but can be a possible over-estimation, including agent IDs whose distance slightly exceeds r with "slightly" being as much as spacing. If you want exact searches set the keyword search to :exact in nearby_*.

Keywords

  • periodic = true: Whether the space is periodic or not. If set to false an error will occur if an agent's position exceeds the boundary.
  • spacing::Real = minimum(extent)/20: Configures an internal compartment spacing that is used to accelerate nearest neighbor searches like nearby_ids. The compartments are actually a full instance of GridSpace in which agents move. All dimensions in extent must be completely divisible by spacing. There is no best choice for the value of spacing and if you need optimal performance it's advised to set up a benchmark over a range of choices. The finer the spacing, the faster and more accurate the inexact version of nearby_ids becomes. However, a finer spacing also means slower move_agent!, as agents change compartments more often.
  • update_vel!: A function, update_vel!(agent, model) that updates the agent's velocity before the agent has been moved, see move_agent!. You can of course change the agents' velocities during the agent interaction, the update_vel! functionality targets spatial force fields acting on the agents individually (e.g. some magnetic field). If you use update_vel!, the agent type must have a field vel::SVector{D, <:Real}.
Agents.EventQueueABMMethod
EventQueueABM <: AgentBasedModel

A concrete implementation of an AgentBasedModel which operates in continuous time, in contrast with the discrete time nature of StandardABM.

This is still experimental which means that it is subject to breaking changes in the future. Also, while all the core functionalities have been implemented, this model type has some more limited features than StandardABM: in particular, visualizations and IO functionalities are incomplete.

Here is a summary of how the time evolution of this model works:

A list of possible events that can be created is provided to the model. The events have four pieces of information:

  1. The action that they perform once triggered. The action is a generic Julia function action!(agent, model) that will act on the agent corresponding to the event. Similarly with agent_step! for StandardABM, this function may do anything and utilize any function from the Agents.jl API or the entire Julia ecosystem. The action! function may spawn new events by using the automatic or the manual of the add_event! function, the default behavior is to generate new events automatically.
  2. The propensity of the event. A propensity is a concept similar to a probability mass. When automatically generating a new event for an agent, first all applicable events for that agent are collected. Then, their propensities are calculated. The event generated then is selected randomly by weighting each possible event by its propensity.
  3. The agent kinds(s) the event applies to. By default it applies to all kinds.
  4. The timing of the event, i.e., when should it be triggered once it is generated. By default this is an exponentially distributed random variable divided by the propensity of the event. I.e., it follows a Poisson process with the propensity as the "rate". The timings of the events therefore establish the natural timescales of the ABM.

Events are scheduled in a temporally ordered queue, and once the model evolution time reaches the event time, the event is "triggered". This means that first the event action is performed on its corresponding agent. By default, once an event has finished its action, a new event is generated for the same agent (if the agent still exists), chosen randomly based on the propensities as discussed above. Then a time for the new event is generated and the new event is added back to the queue. In this way, an event always generates a new event after it has finished its action (by default; this can be overwritten).

EventQueueABM is a generalization of "Gillespie"-like simulations, offering more power and flexibility than a standard Gillespie simulation, while also allowing "Gillespie"-like configuration with the default settings.

Here is how to construct an EventQueueABM:

EventQueueABM(AgentType, events [, space]; kwargs...)

Create an instance of an EventQueueABM. AgentType is a single agent type representing the agents that participate in the simulation. Unlike StandardABM, EventQueueABM does not support Union agent types for multi-agent simulations (because multiple dispatch is not intended to be used to choose events, see the events argument below). Only the @multiagent macro is supported and agent "kinds" should be compared with the kindof function as instructed in the main Tutorial.

space is a subtype of AbstractSpace, see Space for all available spaces.

events is a container of instances of AgentEvent, which are the events that are scheduled and then affect agents. A Tuple or NamedTuple for events leads to optimal performance. The key type of events is also what is given as index to add_event!.

By default, each time a new agent is added to the model via add_agent!, a new event is generated based on the pool of possible events that can affect the agent. In this way the simulation can immediatelly start once agents have been added to the model. You can disable this behavior with a keyword. In this case, you need to manually use the function add_event! to add events to the queue so that the model can be evolved in time. (you can always use this function regardless of the default event scheduling behavior)

Keyword arguments

  • container, properties, rng, warn: same as in StandardABM.
  • autogenerate_on_add::Bool = true: whether to automatically generate a new event for an agent when the agent is added to the model.
  • autogenerate_after_action::Bool = true: whether to automatically generate a new event for an agent after an event affected said agent has been triggered.
Agents.GraphSpaceMethod
GraphSpace(graph::AbstractGraph)

Create a GraphSpace instance that is underlined by an arbitrary graph from Graphs.jl. GraphSpace represents a space where each node (i.e. position) of a graph can hold an arbitrary amount of agents, and each agent can move between the nodes of the graph. The position type for this space is Int, use GraphAgent for convenience.

Graphs.nv and Graphs.ne can be used in a model with a GraphSpace to obtain the number of nodes or edges in the graph. The underlying graph can be altered using add_vertex! and rem_vertex!.

An example using GraphSpace is SIR model for the spread of COVID-19.

If you want to model social networks, where each agent is equivalent with a node of a graph, you're better of using nothing as the model space, and using a graph from Graphs.jl directly in the model parameters, as shown in the Social networks with Graphs.jl integration example.

Distance specification

In functions like nearby_ids, distance for GraphSpace means the degree of neighbors in the graph (thus distance is always an integer). For example, for r=2 includes first and second degree neighbors. For 0 distance, the search occurs only on the origin node.

In functions like nearby_ids the keyword neighbor_type=:default can be used to select differing neighbors depending on the underlying graph directionality type.

  • :default returns neighbors of a vertex (position). If graph is directed, this is equivalent to :out. For undirected graphs, all options are equivalent to :out.
  • :all returns both :in and :out neighbors.
  • :in returns incoming vertex neighbors.
  • :out returns outgoing vertex neighbors.
Agents.GridAgentType
GridAgent{D} <: AbstractAgent

The minimal agent struct for usage with D-dimensional GridSpace. It has an additional pos::NTuple{D,Int} field. See also @agent.

Agents.GridSpaceMethod
GridSpace(d::NTuple{D, Int}; periodic = true, metric = :chebyshev)

Create a GridSpace that has size given by the tuple d, having D ≥ 1 dimensions. Optionally decide whether the space will be periodic and what will be the distance metric. The position type for this space is NTuple{D, Int}, use GridAgent for convenience. Valid positions have indices in the range 1:d[i] for the i-th dimension.

An example using GridSpace is Schelling's segregation model.

Distance specification

The typical terminology when searching neighbors in agent based modelling is "Von Neumann" neighborhood or "Moore" neighborhoods. However, because Agents.jl provides a much more powerful infrastructure for finding neighbors, both in arbitrary dimensions but also of arbitrary neighborhood size, this established terminology is no longer appropriate. Instead, distances that define neighborhoods are specified according to a proper metric space, that is both well defined for any distance, and applicable to any dimensionality.

The allowed metrics are (and see docs online for a plotted example):

  • :chebyshev metric means that the r-neighborhood of a position are all positions within the hypercube having side length of 2*floor(r) and being centered in the origin position. This is similar to "Moore" for r = 1 and two dimensions.

  • :manhattan metric means that the r-neighborhood of a position are all positions whose cartesian indices have Manhattan distance ≤ r from the cartesian index of the origin position. This similar to "Von Neumann" for r = 1 and two dimensions.

  • :euclidean metric means that the r-neighborhood of a position are all positions whose cartesian indices have Euclidean distance ≤ r from the cartesian index of the origin position.

Advanced dimension-dependent distances in Chebyshev metric

If metric = :chebyshev, some advanced specification of distances is allowed when providing r to functions like nearby_ids.

  1. r::NTuple{D,Int} such as r = (5, 2). This would mean a distance of 5 in the first dimension and 2 in the second. This can be useful when different coordinates in the space need to be searched with different ranges, e.g., if the space corresponds to a full building, with the third dimension the floor number.
  2. r::Vector{Tuple{Int,UnitRange{Int}}} such as r = [(1, -1:1), (3, 1:2)]. This allows explicitly specifying the difference between position indices in each specified dimension. The example r = [(1, -1:1), (3, 1:2)] when given to e.g., nearby_ids, would search dimension 1 one step of either side of the current position (as well as the current position since 0 ∈ -1:1) and would search the third dimension one and two positions above current. Unspecified dimensions (like the second in this example) are searched throughout all their possible ranges.

See the Battle Royale example for usage of this advanced specification of dimension-dependent distances where one dimension is used as a categorical one.

Agents.GridSpaceSingleMethod
GridSpaceSingle(d::NTuple{D, Int}; periodic = true, metric = :chebyshev)

This is a specialized version of GridSpace that allows only one agent per position, and utilizes this knowledge to offer significant performance gains versus GridSpace.

This space reserves agent ID = 0 for internal usage. Agents should be initialized with non-zero IDs, either positive or negative. This is not checked internally.

All arguments and keywords behave exactly as in GridSpace.

Agents.NoSpaceAgentType
NoSpaceAgent <: AbstractAgent

The minimal agent struct for usage with nothing as space (i.e., no space). It has the field id::Int, and potentially other internal fields that are not documented as part of the public API. See also @agent.

Agents.StandardABMMethod
StandardABM <: AgentBasedModel

A concrete implementation of an AgentBasedModel, which is also the most commonly used in agent based modelling studies. It operates in discrete time. As input, it requires at least one, or at most two functions: an agent stepping function and a model stepping function. At each discrete step of the simulation, the agent stepping function is applied once to all scheduled agents, and the model stepping function is applied once to the model.

See also EventQueueABM for a continuous time variant.

To construct a StandardABM use the syntax:

StandardABM(AgentType(s) [, space]; properties, agent_step!, model_step!, kwargs...)

The model expects agents of type AgentType(s) living in the given space. AgentType(s) is the result of @agent, @multiagent or a Union of agent types.

space is a subtype of AbstractSpace, see Space for all available spaces. If it is omitted then all agents are virtually in one position and there is no spatial structure. Spaces are mutable objects and are not designed to be shared between models. Create a fresh instance of a space with the same properties if you need to do this.

The evolution rules are functions given to the keywords agent_step!, model_step!.

Keywords

  • agent_step!: the optional agent stepping function that must be in the form agent_step!(agent, model) and is called for each scheduled agent.
  • model_step!: the optional model stepping function that must be in the form model_step!(model). At least one of agent_step! or model_step! must be given. For complicated models, it could be more suitable to use only model_step! to evolve the model, see below the "advanced stepping" example.
  • container = Dict: the type of container the agents are stored at. Use Vector if no agents are removed during the simulation. This allows storing agents more efficiently, yielding faster retrieval and iteration over agents. Use Dict if agents are expected to be removed during the simulation.
  • properties = nothing: additional model-level properties that the user may include in the model. properties can be an arbitrary container of data, however it is most typically a Dict with Symbol keys, or a composite type (struct).
  • scheduler = Schedulers.fastest: is the scheduler that decides the (default) activation order of the agents. See the scheduler API for more options. By default all agents are activated once per step in the fastest sequence possible. scheduler is completely ignored if no agent_step! function is given, as it is assumed that in this case the user takes control of scheduling, e.g., as in the "advanced stepping" example below.
  • rng = Random.default_rng(): the random number generator stored and used by the model in all calls to random functions. Accepts any subtype of AbstractRNG.
  • agents_first::Bool = true: whether to schedule and activate agents first and then call the model_step! function, or vice versa. Ignored if no agent_step! is given.
  • warn=true: some type tests for AgentType(s) are done, and by default warnings are thrown when appropriate.

Advanced stepping

Some advanced models may require special handling for scheduling, or may need to schedule agents several times and act on different subsets of agents with different functions during a single simulation step. In such a scenario, it is more sensible to provide only a model stepping function, where all the dynamics is contained within.

Note that if you do not use the automated agent_step! option, you need to manually check for removed agents during evolution, using the hasid function.

Here is an example:

function complex_model_step!(model)
    # tip: these schedulers should be defined as properties of the model
    scheduler1 = Schedulers.Randomly()
    scheduler2 = user_defined_function_with_model_as_input
    for id in scheduler1(model)
        agent_step1!(model[id], model)
    end
    intermediate_model_action!(model)
    for id in scheduler2(model)
        # here `agent_step2!` may delete agents, so we check for it manually
        hasid(model, id) || continue
        agent_step2!(model[id], model)
    end
    if model.step_counter % 100 == 0
        model_action_every_100_steps!(model)
    end
    final_model_action!(model)
    return
end
Agents.abmeventsMethod
abmevents(model::EventQueueABM)

Return all possible events stored in the model.

Agents.abmexplorationFunction
abmexploration(model::ABM; alabels, mlabels, kwargs...)

Open an interactive application for exploring an agent based model and the impact of changing parameters on the time evolution. Requires Agents.

The application evolves an ABM interactively and plots its evolution, while allowing changing any of the model parameters interactively and also showing the evolution of collected data over time (if any are asked for, see below). The agent based model is plotted and animated exactly as in abmplot, and the model argument as well as splatted kwargs are propagated there as-is. This convencience function only works for aggregated agent data.

Calling abmexploration returns: fig::Figure, abmobs::ABMObservable. So you can save and/or further modify the figure and it is also possible to access the collected data (if any) via the ABMObservable.

Clicking the "reset" button will add a red vertical line to the data plots for visual guidance.

Keywords arguments (in addition to those in abmplot)

  • alabels, mlabels: If data are collected from agents or the model with adata, mdata, the corresponding plots' y-labels are automatically named after the collected data. It is also possible to provide alabels, mlabels (vectors of strings with exactly same length as adata, mdata), and these labels will be used instead.
  • figure = NamedTuple(): Keywords to customize the created Figure.
  • axis = NamedTuple(): Keywords to customize the created Axis.
  • plotkwargs = NamedTuple(): Keywords to customize the styling of the resulting scatterlines plots.
Agents.abmplotFunction
abmplot(model::ABM; kwargs...) → fig, ax, abmobs
abmplot!(ax::Axis/Axis3, model::ABM; kwargs...) → abmobs

Plot an agent based model by plotting each individual agent as a marker and using the agent's position field as its location on the plot. The same function is used to make custom composite plots and animations for the model evolution using the returned abmobs. abmplot is also used to launch interactive GUIs for evolving agent based models, see "Interactivity" below.

See also abmvideo and abmexploration.

Keyword arguments

Agent related

  • agent_color, agent_size, agent_marker : These three keywords decide the color, size, and marker, that each agent will be plotted as. They can each be either a constant or a function, which takes as an input a single agent and outputs the corresponding value. If the model uses a GraphSpace, agent_color, agent_size, agent_marker functions instead take an iterable of agents in each position (i.e. node of the graph).

    Using constants: agent_color = "#338c54", agent_size = 15, agent_marker = :diamond

    Using functions:

    agent_color(a) = a.status == :S ? "#2b2b33" : a.status == :I ? "#bf2642" : "#338c54"
    agent_size(a) = 10rand()
    agent_marker(a) = a.status == :S ? :circle : a.status == :I ? :diamond : :rect

    Notice that for 2D models, agent_marker can be/return a Makie.Polygon instance, which plots each agent as an arbitrary polygon. It is assumed that the origin (0, 0) is the agent's position when creating the polygon. In this case, the keyword as is meaningless, as each polygon has its own size. Use the functions scale, rotate_polygon to transform this polygon.

    3D models currently do not support having different markers. As a result, agent_marker cannot be a function. It should be a Mesh or 3D primitive (such as Sphere or Rect3D).

  • offset = nothing : If not nothing, it must be a function taking as an input an agent and outputting an offset position tuple to be added to the agent's position (which matters only if there is overlap).

  • agentsplotkwargs = () : Additional keyword arguments propagated to the function that plots the agents (typically scatter!).

Preplot related

  • heatarray = nothing : A keyword that plots a model property (that is a matrix) as a heatmap over the space. Its values can be standard data accessors given to functions like run!, i.e. either a symbol (directly obtain model property) or a function of the model. If the space is AbstractGridSpace then matrix must be the same size as the underlying space. For ContinuousSpace any size works and will be plotted over the space extent. For example heatarray = :temperature is used in the Daisyworld example. But you could also define f(model) = create_matrix_from_model... and set heatarray = f. The heatmap will be updated automatically during model evolution in videos and interactive applications.
  • heatkwargs = NamedTuple() : Keywords given to Makie.heatmap function if heatarray is not nothing.
  • add_colorbar = true : Whether or not a Colorbar should be added to the right side of the heatmap if heatarray is not nothing. It is strongly recommended to use abmplot instead of the abmplot! method if you use heatarray, so that a colorbar can be placed naturally.
  • static_preplot! : A function f(ax, abmplot) that plots something after the heatmap but before the agents.
  • spaceplotkwargs = NamedTuple() : keywords utilized when plotting the space. Directly passed toif model space is GraphSpace.
  • adjust_aspect = true: Adjust axis aspect ratio to be the model's space aspect ratio.
  • enable_space_checks = true: Set to false to disable checks related to the model space.

The stand-alone function abmplot also takes two optional NamedTuples named figure and axis which can be used to change the automatically created Figure and Axis objects.

Interactivity

Evolution related

  • add_controls::Bool: If true, abmplot switches to "interactive application GUI" mode where the model evolves interactively using Agents.step!. add_controls is by default false unless params (see below) is not empty. add_controls is also always true in abmexploration. The application has the following interactive elements:
    1. "step": advances the simulation once for dt time.
    2. "run": starts/stops the continuous evolution of the model.
    3. "reset model": resets the model to its initial state from right after starting the interactive application.
    4. Two sliders control the animation speed: "dt" decides how much time to evolve the model before the plot is updated, and "sleep" the sleep() time between updates.
  • enable_inspection = add_controls: If true, enables agent inspection on mouse hover.
  • dt = 1:50: The values of the "dt" slider which is the time to step the model forwards in each frame update, which calls step!(model, dt). This defaults to 1:50 for discrete time models and to 0.1:0.1:10.0 for continuous time ones.
  • params = Dict() : This is a dictionary which decides which parameters of the model will be configurable from the interactive application. Each entry of params is a pair of Symbol to an AbstractVector, and provides a range of possible values for the parameter named after the given symbol (see example online). Changing a value in the parameter slides is only propagated to the actual model after a press of the "update" button.

Data collection related

  • adata, mdata, when: Same as the keyword arguments of Agents.run!. If either or both adata, mdata are given, data are collected and stored in the abmobs, see ABMObservable. The same keywords provide the data plots of abmexploration. This also adds the button "clear data" which deletes previously collected agent and model data by emptying the underlying DataFrames adf/mdf. Reset model and clear data are independent processes.

See the documentation string of ABMObservable for custom interactive plots.

Agents.abmplot!Function
abmplot!(ax::Axis, model::ABM; kwargs...)

See abmplot.

Agents.abmplot_colorsFunction

abmplotcolors(model::ABM{S}, agentcolor) abmplotcolors(model::ABM{S}, agentcolor::Function)

Agents.abmplot_markersFunction
abmplot_markers(model::ABM{S}, agent_marker, pos)
abmplot_markers(model::ABM{S}, agent_marker::Function, pos)
Agents.abmplot_markersizesFunction
abmplot_markersizes(model::ABM{S}, agent_size)
abmplot_markersizes(model::ABM{S}, agent_size::Function)
Agents.abmpropertiesMethod
abmproperties(model::ABM)

Return the properties container stored in the model.

Agents.abmqueueMethod
abmqueue(model::EventQueueABM)

Return the queue of scheduled events in the model. The queue maps two integers (agent id, event index) to the time the event will occur, in absolute time.

Agents.abmrngMethod
abmrng(model::ABM)

Return the random number generator stored in the model.

Agents.abmschedulerMethod
abmscheduler(model::ABM)

Return the default scheduler stored in model.

Agents.abmspaceMethod
abmspace(model::ABM)

Return the space instance stored in the model.

Agents.abmtimeMethod
abmtime(model::ABM)

Return the current time of the model. All models are initialized at time 0.

Agents.abmtimeMethod
abmtime(model::AgentBasedModel)

Return the current time of the model. All models are initialized at time 0.

Agents.abmvideoFunction
abmvideo(file, model; kwargs...)

This function exports the animated time evolution of an agent based model into a video saved at given path file, by recording the behavior of the interactive version of abmplot (without sliders). The plotting is identical as in abmplot and applicable keywords are propagated.

Keywords

  • dt = 1: Time to evolve between each recorded frame. For StandardABM this must be an integer and it is identical to how many steps to take per frame.
  • framerate = 30: The frame rate of the exported video.
  • frames = 300: How many frames to record in total, including the starting frame.
  • title = "": The title of the figure.
  • showstep = true: If current step should be shown in title.
  • figure = NamedTuple(): Figure related keywords (e.g. resolution, backgroundcolor).
  • axis = NamedTuple(): Axis related keywords (e.g. aspect).
  • recordkwargs = NamedTuple(): Keyword arguments given to Makie.record. You can use (compression = 1, profile = "high") for a higher quality output, and prefer the CairoMakie backend. (compression 0 results in videos that are not playable by some software)
  • kwargs...: All other keywords are propagated to abmplot.
Agents.add_agent!Method
add_agent!(agent::AbstractAgent [, pos], model::ABM) → agent

Add the agent to the model in the given position. If pos is not given, the agent is added to a random position. The agent's position is always updated to match position, and therefore for add_agent! the position of the agent is meaningless. Use add_agent_own_pos! to use the agent's position. The type of pos must match the underlying space position type.

Agents.add_agent!Method
add_agent!([pos,] model::ABM, args...) → newagent
add_agent!([pos,] model::ABM; kwargs...) → newagent

Use one of these two versions to create and add a new agent to the model using the constructor of the agent type of the model. Optionally provide a position to add the agent to as first argument, which must match the space position type.

This function takes care of setting the agent id and position. The extra provided args... or kwargs... are propagated to other fields of the agent constructor (see example below). Mixing args... and kwargs... is not possible, only one of the two can be used to set the fields.

add_agent!([pos,] A::Type, model::ABM, args...) → newagent
add_agent!([pos,] A::Type, model::ABM; kwargs...) → newagent

Use one of these two versions for mixed agent models, with A the agent type you wish to create, because it is otherwise not possible to deduce a constructor for A.

Example

using Agents
@agent struct Agent(GraphAgent)
    w::Float64 = 0.1
    k::Bool = false
end
model = StandardABM(Agent, GraphSpace(complete_digraph(5)))

add_agent!(model, 1, 0.5, true) # incorrect: id/pos is set internally
add_agent!(model, 0.5, true) # correct: w becomes 0.5
add_agent!(5, model, 0.5, true) # add at position 5, w becomes 0.5
add_agent!(model; w = 0.5) # use keywords: w becomes 0.5, k becomes false
Agents.add_agent_own_pos!Method
add_agent_own_pos!(agent::AbstractAgent, model::ABM) → agent

Add the agent to the model at the agent's own position.

Agents.add_agent_single!Method
add_agent_single!(agent, model::ABM{<:DiscreteSpace}) → agent

Add the agent to a random position in the space while respecting a maximum of one agent per position, updating the agent's position to the new one.

This function does nothing if there aren't any empty positions.

Agents.add_agent_single!Method
add_agent_single!(model::ABM{<:DiscreteSpace}, properties...; kwargs...)

Same as add_agent!(model, properties...; kwargs...) but ensures that it adds an agent into a position with no other agents (does nothing if no such position exists).

Agents.add_agent_single!Method
add_agent_single!(A, model::ABM{<:DiscreteSpace}, properties...; kwargs...)

Same as add_agent!(A, model, properties...; kwargs...) but ensures that it adds an agent into a position with no other agents (does nothing if no such position exists).

Agents.add_agent_to_model!Method
add_agent_to_model!(agent, model)

Add the agent to the model's internal container, if the addition is valid given the agent's ID and those already in the model. Otherwise error.

Agents.add_agent_to_space!Method
add_agent_to_space!(agent, model)

Add the agent to the underlying space structure at the agent's own position. This function is called after the agent is already inserted into the model dictionary and maxid has been updated. This function is NOT part of the public API.

Agents.add_event!Method
add_event!(agent, model)

Generate a randomly chosen event for the agent and add it to the queue, based on the propensities and as described in EventQueueABM.

add_event!(agent, event_idx, t::Real, model::EventQueueABM)

Add a new event to the queue to be triggered for agent, based on the index of the event (from the given events to the model). The event will trigger in t time from the current time of the model.

Agents.add_interaction!Function
add_interaction!(ax)
add_interaction!(ax, p::_ABMPlot)

Adds model control buttons and parameter sliders according to the plotting keywords add_controls (if true) and params (if not empty). Buttons and sliders are placed next to each other in a new layout position below the position of ax.

Agents.agent2stringFunction
agent2string(agent::A)

Convert agent data into a string which is used to display all agent variables and their values in the tooltip on mouse hover. Concatenates strings if there are multiple agents at one position. Custom tooltips for agents can be implemented by adding a specialised method for agent2string.

Example:

function Agents.agent2string(agent::SpecialAgent)
    """
    ✨ SpecialAgent ✨
    ID = $(agent.id)
    Main weapon = $(agent.charisma)
    Side weapon = $(agent.pistol)
    """
end
Agents.agent_validatorMethod
agent_validator(AgentType, space)

Validate the user supplied agent (subtype of AbstractAgent). Checks for mutability and existence and correct types for fields depending on SpaceType.

Agents.agents_in_positionMethod
agents_in_position(position, model::ABM{<:DiscreteSpace})
agents_in_position(agent, model::ABM{<:DiscreteSpace})

Return an iterable of the agents in position, or in the position ofagent`.

Agents.allagentsMethod
allagents(model)

Return an iterator over all agents of the model.

Agents.allidsMethod
allids(model)

Return an iterator over all agent IDs of the model.

Agents.cell_centerMethod

given position in continuous space, return continuous space coordinates of cell center.

Agents.collect_agent_data!Function
collect_agent_data!(df, model, properties; obtainer = identity)

Collect and add agent data into df (see run! for the dispatch rules of properties and obtainer).

Agents.convert_element_posFunction
convert_element_pos(::S, pos)

Convert a Point{2, Float32}/Point{3, Float32} position of an element in the Makie figure (e.g. a single scatter point representing an agent) to its corresponding position in the given space S.

Agents.datanameMethod
dataname(k) → name

Return the name of the column of the i-th collected data where k = adata[i] (or mdata[i]). dataname also accepts tuples with aggregate and conditional values.

Agents.discretimeabmMethod
discretimeabm(model)

Return true if the model is in discrete time, false if it is continuous.

Agents.do_checksMethod
do_checks(agent, space)

Helper function for agent_validator.

Agents.dummystepMethod
dummystep(model)

Used instead of model_step! in step! if no function is useful to be defined.

dummystep(agent, model)

Used instead of agent_step! in step! if no function is useful to be defined.

Agents.elastic_collision!Function
elastic_collision!(a, b, f = nothing) → happened

Resolve a (hypothetical) elastic collision between the two agents a, b. They are assumed to be disks of equal size touching tangentially. Their velocities (field vel) are adjusted for an elastic collision happening between them. This function works only for two dimensions. Notice that collision only happens if both disks face each other, to avoid collision-after-collision.

If f is a Symbol, then the agent property f, e.g. :mass, is taken as a mass to weight the two agents for the collision. By default no weighting happens.

One of the two agents can have infinite "mass", and then acts as an immovable object that specularly reflects the other agent. In this case momentum is not conserved, but kinetic energy is still conserved.

Return a boolean encoding whether the collision happened.

Example usage in Continuous space social distancing.

Agents.empty_nearby_positionsFunction
empty_nearby_positions(pos, model::ABM{<:DiscreteSpace}, r = 1; kwargs...)
empty_nearby_positions(agent, model::ABM{<:DiscreteSpace}, r = 1; kwargs...)

Return an iterable of all empty positions within radius r from the given position or the given agent.

The value of r and possible keywords operate identically to nearby_positions.

Agents.empty_positionsMethod
empty_positions(model)

Return a list of positions that currently have no agents on them.

Agents.ensemblerun!Method
ensemblerun!(generator, n; kwargs...)

Generate many ABMs and propagate them into ensemblerun!(models, ...) using the provided generator which is a one-argument function whose input is a seed.

This method has additional keywords ensemble = 5, seeds = rand(UInt32, ensemble).

Agents.ensemblerun!Method
ensemblerun!(models::Vector, n; kwargs...)

Perform an ensemble simulation of run! for all model ∈ models. Each model should be a (different) instance of an AgentBasedModel but probably initialized with a different random seed or different initial agent distribution. All models obey the same evolution rules contained in the model and are evolved for n.

Similarly to run! this function will collect data. It will furthermore add one additional column to the dataframe called :ensemble, which has an integer value counting the ensemble member. The function returns agent_df, model_df, models.

If you want to scan parameters and at the same time run multiple simulations at each parameter combination, simply use seed as a parameter, and use that parameter to tune the model's initial random seed and/or agent distribution.

See example usage in Schelling's segregation model.

Keywords

The following keywords modify the ensemblerun! function:

  • parallel::Bool = false whether Distributed.pmap is invoked to run simulations in parallel. This must be used in conjunction with @everywhere (see Performance Tips).
  • showprogress::Bool = false whether a progressbar will be displayed to indicate % runs finished.

All other keywords are propagated to run! as-is.

Agents.euclidean_distanceMethod
euclidean_distance(a, b, model::ABM)

Return the euclidean distance between a and b (either agents or agent positions), respecting periodic boundary conditions (if in use). Works with any space where it makes sense: currently AbstractGridSpace and ContinuousSpace.

Example usage in the Flocking model.

Agents.fill_space!Method
fill_space!([A ,] model::ABM{<:DiscreteSpace,A}, args...)
fill_space!([A ,] model::ABM{<:DiscreteSpace,A}; kwargs...)
fill_space!([A ,] model::ABM{<:DiscreteSpace,A}, f::Function)

Add one agent to each position in the model's space. Similarly with add_agent!, fill_space creates the necessary agents and adds them to the model. Like in add_agent! you may use either args... or kwargs... to set the remaining properties of the agent.

Alternatively, you may use the third version. If instead of args... a function f is provided, then args = f(pos) is the result of applying f where pos is each position (tuple for grid, integer index for graph). Hence, in this case f must create all other agent properties besides mandatory id, pos.

An optional first argument is an agent type to be created, and targets mixed agent models where the agent constructor cannot be deduced (since it is a union).

Agents.get_ABMPlot_typeMethod

Helper function to retrieve the automatically generated ABMPlot type from the AgentsVisualizations extension. Returns nothing if AgentsVisualizations was not loaded.

Agents.get_axis_limitsFunction
get_axis_limits(model::ABM{S}) where {S<:Agents.AbstractSpace}

Return appropriate axis limits for given model. Return nothing, nothing if you want to disable this.

Agents.get_directionMethod
get_direction(from, to, model::ABM)

Return the direction vector from the position from to position to taking into account periodicity of the space.

Agents.get_spatial_indexMethod
get_spatial_index(pos, property::AbstractArray, model::ABM)

Convert the continuous agent position into an appropriate index of property, which represents some discretization of a spatial field over a ContinuousSpace.

The dimensionality of property and the continuous space do not have to match. If property has lower dimensionality than the space (e.g. representing some surface property in 3D space) then the front dimensions of pos will be used to index.

Agents.get_spatial_propertyMethod
get_spatial_property(pos, property::AbstractArray, model::ABM)

Convert the continuous agent position into an appropriate index of property, which represents some discretization of a spatial field over a ContinuousSpace. Then, return property[index]. To get the index directly, for e.g. mutating the property in-place, use get_spatial_index.

Agents.get_spatial_propertyMethod
get_spatial_property(pos, property::Function, model::ABM)

Literally equivalent with property(pos, model), provided just for syntax consistency.

Agents.get_writerMethod
get_writer(backend)

Return a function to write to file using a given backend. The returned writer function will take three arguments: filename, data to write, whether to append to existing file or not.

Agents.has_empty_positionsMethod
has_empty_positions(model::ABM{<:DiscreteSpace})

Return true if there are any positions in the model without agents.

Agents.hasidMethod
hasid(model, id::Int) → true/false
hasid(model, agent::AbstractAgent) → true/false

Return true if the model has an agent with given id or has the given agent.

Agents.id_in_positionMethod
id_in_position(pos, model::ABM{<:GridSpaceSingle}) → id

Return the agent ID in the given position. This will be 0 if there is no agent in this position.

This is similar to ids_in_position, but specialized for GridSpaceSingle. See also isempty.

Agents.ids_in_positionMethod
ids_in_position(position, model::ABM{<:DiscreteSpace})
ids_in_position(agent, model::ABM{<:DiscreteSpace})

Return the ids of agents in the position corresponding to position or position of agent.

Agents.index_mapped_groupsMethod
index_mapped_groups(order::Int, model::ABM; scheduler = Schedulers.ByID)
index_mapped_groups(order::Int, model::ABM, filter::Function; scheduler = Schedulers.ByID)

Return an iterable of agent ids in the model, meeting the filter criteria if used.

Agents.interacting_pairsMethod
interacting_pairs(model, r, method; scheduler = abmscheduler(model)) → piter

Return an iterator that yields unique pairs of agents (a, b) that are close neighbors to each other, within some interaction radius r.

This function is usefully combined with model_step!, when one wants to perform some pairwise interaction across all pairs of close agents once (and does not want to trigger the event twice, both with a and with b, which would be unavoidable when using agent_step!). This means, that if a pair (a, b) exists, the pair (b, a) is not included in the iterator!

Use piter.pairs to get a vector of pair IDs from the iterator.

The argument method provides three pairing scenarios

  • :all: return every pair of agents that are within radius r of each other, not only the nearest ones.
  • :nearest: agents are only paired with their true nearest neighbor (existing within radius r). Each agent can only belong to one pair, therefore if two agents share the same nearest neighbor only one of them (sorted by distance, then by next id in scheduler) will be paired.
  • :types: For mixed agent models only. Return every pair of agents within radius r (similar to :all), only capturing pairs of differing types. For example, a model of Union{Sheep,Wolf} will only return pairs of (Sheep, Wolf). In the case of multiple agent types, e.g. Union{Sheep, Wolf, Grass}, skipping pairings that involve Grass, can be achieved by a scheduler that doesn't schedule Grass types, i.e.: scheduler(model) = (a.id for a in allagents(model) if !(a isa Grass)).

The following keywords can be used:

  • scheduler = abmscheduler(model), which schedulers the agents during iteration for finding pairs. Especially in the :nearest case, this is important, as different sequencing for the agents may give different results (if b is the nearest agent for a, but a is not the nearest agent for b, whether you get the pair (a, b) or not depends on whether a was scheduler first or not).
  • search = :exact decides how to find nearby IDs in the :all, :types cases. Must be :exact or :approximate.

Example usage in https://juliadynamics.github.io/AgentsExampleZoo.jl/dev/examples/growing_bacteria/.

Better performance with CellListMap.jl

Notice that in most applications that interacting_pairs is useful, there is significant (10x-100x) performance gain to be made by integrating with CellListMap.jl. Checkout the Integrating Agents.jl with CellListMap.jl integration example for how to do this.

Agents.is_stationaryMethod
is_stationary(agent, model)

Return true if agent has reached the end of its route, or no route has been set for it. Used in setups where using move_along_route! is valid.

Agents.iter_agent_groupsMethod
iter_agent_groups(order::Int, model::ABM; scheduler = Schedulers.by_id)

Return an iterator over all agents of the model, grouped by order. When order = 2, the iterator returns agent pairs, e.g (agent1, agent2) and when order = 3: agent triples, e.g. (agent1, agent7, agent8). order must be larger than 1 but has no upper bound.

Index order is provided by the scheduler input which is a scheduler.

Agents.manhattan_distanceMethod
manhattan_distance(a, b, model::ABM)

Return the manhattan distance between a and b (either agents or agent positions), respecting periodic boundary conditions (if in use). Works with any space where it makes sense: currently AbstractGridSpace and ContinuousSpace.

Agents.map_agent_groupsMethod
map_agent_groups(order::Int, f::Function, model::ABM; kwargs...)
map_agent_groups(order::Int, f::Function, model::ABM, filter::Function; kwargs...)

Applies function f to all grouped agents of an iter_agent_groups iterator. kwargs are passed to the iterator method. f must take the form f(NTuple{O,AgentType}), where the dimension O is equal to order.

Optionally, a filter function that accepts an iterable and returns a Bool can be applied to remove unwanted matches from the results. Note: This option cannot keep matrix order, so should be used in conjunction with index_mapped_groups to associate agent ids with the resultant data.

Agents.move_agent!Method
move_agent!(agent, model::ABM{<:ContinuousSpace}, dt::Real)

Propagate the agent forwards one step according to its velocity, after updating the agent's velocity (if configured using update_vel!, see ContinuousSpace).

For this continuous space version of move_agent!, the "time evolution" is a trivial Euler scheme with dt the step size, i.e. the agent position is updated as agent.pos += agent.vel * dt.

Unlike move_agent!(agent, [pos,] model), this function respects the space size. For non-periodic spaces, agents will walk up to, but not reach, the space extent. For periodic spaces movement properly wraps around the extent.

Agents.move_agent!Method
move_agent!(agent [, pos], model::ABM) → agent

Move agent to the given position, or to a random one if a position is not given. pos must have the appropriate position type depending on the space type.

The agent's position is updated to match pos after the move.

Agents.move_agent_single!Method
move_agent_single!(agent, model::ABM{<:DiscreteSpace}; cutoff) → agent

Move agent to a random position while respecting a maximum of one agent per position. If there are no empty positions, the agent won't move.

The keyword cutoff = 0.998 is sent to random_empty.

Agents.nagentsMethod
nagents(model::ABM)

Return the number of agents in the model.

Agents.nearby_agentsFunction
nearby_agents(agent, model::ABM, r = 1; kwargs...) -> agent

Return an iterable of the agents near the position of the given agent.

The value of the argument r and possible keywords operate identically to nearby_ids.

Agents.nearby_idsFunction
nearby_ids(pos, model::ABM, r = 1; kwargs...) → ids

Return an iterable over the IDs of the agents within distance r (inclusive) from the given position. The position must match type with the spatial structure of the model. The specification of what "distance" means depends on the space, hence it is explained in each space's documentation string. Keyword arguments are space-specific and also described in each space's documentation string.

nearby_ids always includes IDs with 0 distance to pos.

Agents.nearby_idsFunction
nearby_ids(agent::AbstractAgent, model::ABM, r=1)

Same as nearby_ids(agent.pos, model, r) but the iterable excludes the given agent's id.

Agents.nearby_positionsFunction
nearby_positions(pos, model::ABM{<:DiscreteSpace}, r=1; kwargs...)

Return an iterable of all positions within "radius" r of the given position (which excludes given position). The position must match type with the spatial structure of the model.

The value of r and possible keywords operate identically to nearby_ids.

This function only exists for discrete spaces with a finite amount of positions.

nearby_positions(position, model::ABM{<:OpenStreetMapSpace}; kwargs...) → positions

For OpenStreetMapSpace this means "nearby intersections" and operates directly on the underlying graph of the OSM, providing the intersection nodes nearest to the given position.

Agents.nearby_positionsFunction
nearby_positions(agent::AbstractAgent, model::ABM, r=1)

Same as nearby_positions(agent.pos, model, r).

Agents.nearest_neighborMethod
nearest_neighbor(agent, model::ABM{<:ContinuousSpace}, r) → nearest

Return the agent that has the closest distance to given agent. Return nothing if no agent is within distance r.

Agents.nextidMethod
nextid(model::ABM) → id

Return a valid id for creating a new agent with it.

Agents.normalize_positionMethod
normalize_position(pos, model::ABM{<:Union{AbstractGridSpace,ContinuousSpace}})

Return the position pos normalized for the extents of the space of the given model. For periodic spaces, this wraps the position along each dimension, while for non-periodic spaces this clamps the position to the space extent.

Agents.npositionsMethod
npositions(model::ABM{<:DiscreteSpace})

Return the number of positions of a model with a discrete space.

Agents.offline_run!Function
offline_run!(model, t::Union{Real, Function}; kwargs...)

Do the same as run, but instead of collecting all the data into an in-memory dataframe, write the output to a file after collecting data writing_interval times and empty the dataframe after each write. Useful when the amount of collected data is expected to exceed the memory available during execution.

Keywords

  • backend=:csv : backend to use for writing data. Currently supported backends: :csv, :arrow.
  • adata_filename="adata.$backend" : a file to write agent data on. Appends to the file if it already exists, otherwise creates the file.
  • mdata_filename="mdata.$backend": a file to write the model data on. Appends to the file if it already exists, otherwise creates the file.
  • writing_interval=1 : write to file every writing_interval times data collection is triggered (which is set by the when and when_model keywords).
  • All other keywords are propagated to run!.
Agents.offsets_at_radiusMethod
offsets_at_radius(model::ABM{<:AbstractGridSpace}, r::Real)

The function does two things:

  1. If a vector of indices exists in the model, it returns that.
  2. If not, it creates this vector, stores it in the model and then returns that.
Agents.offsets_within_radiusMethod
offsets_within_radius(model::ABM{<:AbstractGridSpace}, r::Real)

The function does two things:

  1. If a vector of indices exists in the model, it returns that.
  2. If not, it creates this vector, stores it in the model and then returns that.
Agents.paramscanMethod
paramscan(parameters::AbstractDict, initialize; kwargs...) → adf, mdf

Perform a parameter scan of an ABM simulation output by collecting data from all parameter combinations into dataframes (one for agent data, one for model data). The dataframes columns are both the collected data (as in run!) but also the input parameter values used.

parameters is a dictionary with key type Symbol. Each entry of the dictionary maps a parameter key to the parameter values that should be scanned over (or to a single parameter value that will remain constant throughout the scans). The approach regarding parameters is as follows:

  • If the value of a specific key is a Vector, all values of the vector are expended as values for the parameter to scan over.
  • If the value of a specific key is not a Vector, it is assumed that whatever this value is, it corresponds to a single and constant parameter value and therefore it is not expanded or scanned over.

This is done so that parameter values that are inherently iterable (such as a String) are not wrongly expanded into their constituents. (if the value of a parameter is itself a Vector, then you need to pass in a vector of vectors to scan the parameter)

The second argument initialize is a function that creates an ABM and returns it. It must accept keyword arguments which are the keys of the parameters dictionary. Since the user decides how to use input arguments to make an ABM, parameters can be used to affect model properties, space type and creation as well as agent properties, see the example below.

Keywords

The following keywords modify the paramscan function:

  • include_constants::Bool = false: by default, only the varying parameters (Vector values in parameters) will be included in the output DataFrame. If true, constant parameters (non-Vector in parameters) will also be included.
  • parallel::Bool = false whether Distributed.pmap is invoked to run simulations in parallel. This must be used in conjunction with @everywhere (see Performance Tips).
  • showprogress::Bool = false whether a progressbar will be displayed to indicate % runs finished.

All other keywords are propagated into run!. Furthermore, n is also a keyword here, that is given to run! as argument. Naturally, the number of time steps n and at least one of adata, mdata are mandatory. The adata, mdata lists shouldn't contain the parameters that are already in the parameters dictionary to avoid duplication.

Example

A runnable example that uses paramscan is shown in Schelling's segregation model. There, we define

function initialize(; numagents = 320, griddims = (20, 20), min_to_be_happy = 3)
    space = GridSpaceSingle(griddims, periodic = false)
    properties = Dict(:min_to_be_happy => min_to_be_happy)
    model = StandardABM(SchellingAgent, space;
                properties = properties, scheduler = Schedulers.randomly)
    for n in 1:numagents
        add_agent_single!(SchellingAgent, model, n < numagents / 2 ? 1 : 2)
    end
    return model
end

and do a parameter scan by doing:

happyperc(moods) = count(moods) / length(moods)
adata = [(:mood, happyperc)]

parameters = Dict(
    :min_to_be_happy => collect(2:5), # expanded
    :numagents => [200, 300],         # expanded
    :griddims => (20, 20),            # not Vector = not expanded
)

adf, _ = paramscan(parameters, initialize; adata, n = 3)
Agents.pos2cellMethod

given position in continuous space, return cell coordinates in grid space.

Agents.positionsMethod
positions(model::ABM{<:DiscreteSpace}) → ns

Return an iterator over all positions of a model with a discrete space.

positions(model::ABM{<:DiscreteSpace}, by::Symbol) → ns

Return all positions of a model with a discrete space, sorting them using the argument by which can be:

  • :random - randomly sorted
  • :population - positions are sorted depending on how many agents they accommodate. The more populated positions are first.
Agents.random_agentMethod
random_agent(model, condition; optimistic=true, alloc = false) → agent

Return a random agent from the model that satisfies condition(agent) == true. The function generates a random permutation of agent IDs and iterates through them. If no agent satisfies the condition, nothing is returned instead.

Keywords

optimistic = true changes the algorithm used to be non-allocating but potentially more variable in performance. This should be faster if the condition is true for a large proportion of the population (for example if the agents are split into groups).

alloc can be used to employ a different fallback strategy in case the optimistic version doesn't find any agent satisfying the condition: if the filtering condition is expensive an allocating fallback can be more performant.

Agents.random_agentMethod
random_agent(model) → agent

Return a random agent from the model.

Agents.random_agent_in_positionMethod
random_agent_in_position(pos, model::ABM, [f, alloc = false]) → agent

Return a random agent in the position specified in pos.

A filter function f(agent) can be passed so that to restrict the sampling on only those agents for which the function returns true. The argument alloc can be used if the filtering condition is expensive since in this case the allocating version can be more performant. nothing is returned if no nearby position satisfies f.

Use random_nearby_agent instead to return a random agent near the position of a given agent.

Agents.random_emptyFunction
random_empty(model::ABM{<:DiscreteSpace})

Return a random position without any agents, or nothing if no such positions exist.

Agents.random_idMethod
random_id(model) → id

Return a random id from the model.

Agents.random_id_in_positionMethod
random_id_in_position(pos, model::ABM, [f, alloc = false]) → id

Return a random id in the position specified in pos.

A filter function f(id) can be passed so that to restrict the sampling on only those agents for which the function returns true. The argument alloc can be used if the filtering condition is expensive since in this case the allocating version can be more performant. nothing is returned if no nearby position satisfies f.

Use random_nearby_id instead to return the id of a random agent near the position of a given agent.

Agents.random_nearby_agentFunction
random_nearby_agent(agent, model::ABM, r = 1, f = nothing, alloc = false; kwargs...) → agent

Return a random agent near the position of the given agent or nothing if no agent is nearby.

The value of the argument r and possible keywords operate identically to nearby_ids.

A filter function f(agent) can be passed so that to restrict the sampling on only those agents for which the function returns true. The argument alloc can be used if the filtering condition is expensive since in this case the allocating version can be more performant. nothing is returned if no nearby agent satisfies f.

For discrete spaces, use random_agent_in_position instead to return a random agent at a given position.

Agents.random_nearby_idFunction
random_nearby_id(agent, model::ABM, r = 1, f = nothing, alloc = false; kwargs...) → id

Return the id of a random agent near the position of the given agent.

Return nothing if no agents are nearby.

The value of the argument r and possible keywords operate identically to nearby_ids.

A filter function f(id) can be passed so that to restrict the sampling on only those ids for which the function returns true. The argument alloc can be used if the filtering condition is expensive since in this case the allocating version can be more performant. nothing is returned if no nearby id satisfies f.

For discrete spaces, use random_id_in_position instead to return a random id at a given position.

This function, as all the other methods which sample from lazy iterators, uses an optimized algorithm which doesn't require to collect all elements to just sample one of them.

Agents.random_nearby_positionFunction
random_nearby_position(pos, model::ABM, r=1, f = nothing, alloc = false; kwargs...) → position

Return a random position near the given position. Return nothing if the space doesn't allow for nearby positions.

The value of the argument r and possible keywords operate identically to nearby_positions.

A filter function f(pos) can be passed so that to restrict the sampling on only those positions for which the function returns true. The argument alloc can be used if the filtering condition is expensive since in this case the allocating version can be more performant. nothing is returned if no nearby position satisfies f.

Agents.random_positionMethod
random_position(model) → pos

Return a random position in the model's space (always with appropriate Type).

Agents.randomwalk!Function
randomwalk!(agent, model::ABM{<:AbstractGridSpace}, r::Real = 1; kwargs...)

Move agent for a distance r in a random direction respecting boundary conditions and space metric. For Chebyshev and Manhattan metric, the step size r is rounded to floor(Int,r); for Euclidean metric in a GridSpace, random walks are ill defined and hence not supported.

For example, for Chebyshev metric and r=1, this will move the agent with equal probability to any of the 8 surrounding cells. For Manhattan metric, it will move to any of the 4 surrounding cells.

Keywords

  • ifempty will check that the target position is unoccupied and only move if that's true. So if ifempty is true, this can result in the agent not moving even if there are available positions. By default this is true, set it to false if different agents can occupy the same position. In a GridSpaceSingle, agents cannot overlap anyways and this keyword has no effect.
  • force_motion has an effect only if ifempty is true or the space is a GridSpaceSingle. If set to true, the search for the random walk will be done only on the empty positions, so in this case the agent will always move if there is at least one empty position to choose from. By default this is false.
Agents.randomwalk!Method
randomwalk!(agent, model::ABM{<:ContinuousSpace} [, r];
    [polar=Uniform(-π,π), azimuthal=Arccos(-1,1)]
)

Re-orient and move agent for a distance r in a random direction respecting space boundary conditions. By default r = norm(agent.vel).

The ContinuousSpace version is slightly different than the grid space. Here, the agent's velocity is updated by the random vector generated for the random walk.

Uniform/isotropic random walks are supported in any number of dimensions while an angles distribution can be specified for 2D and 3D random walks. In this case, the velocity vector is rotated using random angles given by the distributions for polar (2D and 3D) and azimuthal (3D only) angles, and scaled to have measure r. After the re-orientation the agent is moved for r in the new direction.

Anything that supports rand can be used as an angle distribution instead. This can be useful to create correlated random walks.

Agents.remove_agent!Method
remove_agent!(agent::AbstractAgent, model::ABM)
remove_agent!(id::Int, model::ABM)

Remove an agent from the model.

Agents.remove_agent_from_space!Method
remove_agent_from_space!(agent, model)

Remove the agent from the underlying space structure. This function is called after the agent is already removed from the model container. This function is NOT part of the public API.

Agents.remove_all!Method
remove_all!(model::ABM, IDs)

Remove the agents with the given IDs.

Agents.remove_all!Method
remove_all!(model::ABM, f::Function)

Remove all agents where the function f(agent) returns true.

Agents.remove_all!Method
remove_all!(model::ABM, n::Int)

Remove the agents whose IDs are larger than n.

Agents.replicate!Method
replicate!(agent::AbstractAgent model; kwargs...)

Add a new agent to the model copying the values of the fields of the given agent. With the kwargs it is possible to override the values by specifying new ones for some fields, including the pos field. The id field is set to a new one automatically.

Return the new agent instance.

Example

using Agents
@agent struct A(GridAgent{2})
    k::Float64
    w::Float64
end

model = StandardABM(A, GridSpace((5, 5)))
a = A(1, (2, 2), 0.5, 0.5)
b = replicate!(a, model; w = 0.8)
Agents.rotateMethod
rotate(w::SVector{2}, θ::Real)

Rotate two-dimensional vector w by an angle θ. The angle must be given in radians.

Agents.rotateMethod
rotate(w::SVector{3}, θ::Real, ϕ::Real)

Rotate three-dimensional vector w by angles θ (polar) and ϕ (azimuthal). The angles must be given in radians.

Note that in general a 3D rotation requires 1 angle and 1 axis of rotation (or 3 angles). Here, using only 2 angles, w is first rotated by angle θ about an arbitrarily chosen vector (u) normal to it (u⋅w=0); this new rotated vector (a) is then rotated about the original w by the angle ϕ. The resulting vector (v) satisfies (v⋅w)/(|v|*|w|) = cos(θ) ∀ ϕ.

Agents.rotate_polygonFunction
rotate_polygon(p::Polygon, θ)

Rotate given polygon counter-clockwise by θ (in radians).

Agents.run!Function
run!(model::ABM, t::Union{Real, Function}; kwargs...)

Run the model (call step!(model, t) and collect data specified by the keywords, explained one by one below. Return the data as two DataFrames, agent_df, model_df, one for agent-level data and one for model-level data.

See also offline_run! to write data to file while running the model.

Data-deciding keywords

  • adata::Vector means "agent data to collect". If an entry is a Symbol, e.g. :weight, then the data for this entry is agent's field weight. If an entry is a Function, e.g. f, then the data for this entry is just f(a) for each agent a. The resulting dataframe columns are named with the input symbol (here :weight, :f).

  • adata::Vector{<:Tuple}: if adata is a vector of tuples instead, data aggregation is done over the agent properties.

    For each 2-tuple, the first entry is the "key" (any entry like the ones mentioned above, e.g. :weight, f). The second entry is an aggregating function that aggregates the key, e.g. mean, maximum. So, continuing from the above example, we would have adata = [(:weight, mean), (f, maximum)].

    It's also possible to provide a 3-tuple, with the third entry being a conditional function (returning a Bool), which assesses if each agent should be included in the aggregate. For example: x_pos(a) = a.pos[1]>5 with (:weight, mean, x_pos) will result in the average weight of agents conditional on their x-position being greater than 5.

    The resulting data name columns use the function dataname. They create something like :mean_weight or :maximum_f_x_pos. In addition, you can use anonymous functions in a list comprehension to assign elements of an array into different columns: adata = [(a)->(a.interesting_array[i]) for i=1:N]. Column names can also be renamed with DataFrames.rename! after data is collected.

    Notice: Aggregating only works if there are agents to be aggregated over. If you remove agents during model run, you should modify the aggregating functions. E.g. instead of passing mean, pass mymean(a) = isempty(a) ? 0.0 : mean(a).

  • mdata::Vector means "model data to collect" and works exactly like adata. For the model, no aggregation is possible (nothing to aggregate over).

    Alternatively, mdata can also be a function. This is a "generator" function, that accepts model as input and provides a Vector that represents mdata. Useful in combination with an ensemblerun! call that requires a generator function.

By default both keywords are nothing, i.e. nothing is collected/aggregated.

Mixed-Models

For mixed-models, the adata keyword has some additional options & properties. An additional column agent_type will be placed in the output dataframe.

In the case that data is needed for one agent type that does not exist in a second agent type, missing values will be added to the dataframe.

Warning: Since this option is inherently type unstable, try to avoid this in a performance critical situation.

Aggregate functions will fail if missing values are not handled explicitly. If a1.weight but a2 (type: Agent2) has no weight, use a2(a) = a isa Agent2; adata = [(:weight, sum, a2)] to filter out the missing results.

Other keywords

  • when = 1: at which times to perform the data collection and processing. A lot of flexibility is offered based on the type of when. Let t = abmtime(model) (which is updated throughout the run! process).
    • when::Real: data are collected each time the model is evolved for at least when units of time. For discrete time models like StandardABM this must be an integer and in essence it means how many steps to evolve between each data collection. For continuous time models like EventQueueABM when is the least amount of time to evolve the model (with maximum being until an upcoming event is triggered).
    • when::AbstractVector: data are collected for t ∈ when.
    • when::Function: data are collected whenever when(model, t) returns true.
  • when_model = when: same as when but for model data.
  • init = true: Whether to collect data at the initial model state before it is stepped.
  • dt = 0.01: minimum stepping time for continuous time models between data collection checks of when and possible data recording time. If when isa Real then it must hold dt ≤ minimum(when, when_model). This keyword is ignored for discrete time models as it is 1 by definition.
  • obtainer = identity: method to transfer collected data to the DataFrame. Typically only change this to copy if some data are mutable containers (e.g. Vector) which change during evolution, or deepcopy if some data are nested mutable containers. Both of these options have performance penalties.
  • showprogress=false: Whether to show progress.
Agents.sample!Function
sample!(model::ABM, n [, weight]; kwargs...)

Replace the agents of the model with a random sample of the current agents with size n.

Optionally, provide a weight: Symbol (agent field) or function (input agent out put number) to weight the sampling. This means that the higher the weight of the agent, the higher the probability that this agent will be chosen in the new sampling.

Keywords

  • replace = true : whether sampling is performed with replacement, i.e. all agents can

be chosen more than once.

Example usage in Wright-Fisher model of evolution.

Agents.scale_polygonFunction
scale_polygon(p::Polygon, s)

Scale given polygon by s, assuming polygon's center of reference is the origin.

Agents.scheduleMethod
schedule(model::StandardABM) → ids

Return an iterator over the scheduled IDs using the model's default scheduler.

Agents.spaceplot!Function
spaceplot!(ax, p::ABMPlot; spaceplotkwargs...)

Create a space-dependent preplot.

Agents.swap_agents!Method
swap_agents!(agent1, agent2, model::ABM{<:DiscreteSpace})

Swap the given agent's positions, moving each of them to the position of the other agent.

Agents.uniform_randomwalk!Method

This is called internally by randomwalk! for more performant isotropic/uniform random walks; it also works for any number of dimensions.

Agents.walk!Method
walk!(agent, direction::NTuple, model::ABM{<:AbstractGridSpace}; ifempty = true)
walk!(agent, direction::SVector, model::ABM{<:ContinuousSpace})

Move agent in the given direction respecting periodic boundary conditions. For non-periodic spaces, agents will walk to, but not exceed the boundary value. Available for both AbstractGridSpace and ContinuousSpaces.

The type of direction must be the same as the space position. AbstractGridSpace asks for Int tuples, and ContinuousSpace for Float64 static vectors, describing the walk distance in each direction. direction = (2, -3) is an example of a valid direction on a AbstractGridSpace, which moves the agent to the right 2 positions and down 3 positions. Agent velocity is ignored for this operation in ContinuousSpace.

Keywords

  • ifempty will check that the target position is unoccupied and only move if that's true. Available only on AbstractGridSpace.

Example usage in Battle Royale.

Base.getindexMethod
model[id]
getindex(model::ABM, id::Int)

Return an agent given its ID.

Base.getpropertyMethod
model.prop
getproperty(model::ABM, :prop)

Return a property with name :prop from the current model, assuming the model properties are either a dictionary with key type Symbol or a Julia struct. For example, if a model has the set of properties Dict(:weight => 5, :current => false), retrieving these values can be obtained via model.weight or model.current.

Base.isemptyMethod
isempty(pos, model::ABM{<:DiscreteSpace})

Return true if there are no agents in position.

CommonSolve.step!Method
step!(model::ABM)

Perform one simulation step for the model. For continuous time models, this means to run to the model up to the next event and perform that.

step!(model::ABM, t::Real)

Step the model forwards until there is a temporal difference ≥ t from the current model time. I.e., step the model forwards for at least t time. For discrete time models like StandardABM t must be integer and evolves the model for exactly t steps.

step!(model::ABM, f::Function)

Step the model forwards until f(model, t) returns true, where t is the current amount of time the model has been evolved for, starting from the model's initial time.

See also Advanced stepping.

DynamicSumTypes.allkindsMethod
allkinds(AgentType::Type) → kinds::Tuple

Return all "kinds" that compose the given agent type that was generated via the @multiagent macro. The kinds are returned as a tuple of Symbols.

DynamicSumTypes.kindofMethod
kindof(agent::AbstractAgent) → kind::Symbol

Return the "kind" (instead of type) of the agent, which is the name given to the agent subtype when it was created with @multiagent.

Graphs.SimpleGraphs.add_edge!Method
add_edge!(model::ABM{<:GraphSpace},  args...; kwargs...)

Add a new edge (relationship between two positions) to the graph. Returns a boolean, true if the operation was successful.

args and kwargs are directly passed to the add_edge! dispatch that acts the underlying graph type.

Graphs.SimpleGraphs.add_vertex!Method
add_vertex!(model::ABM{<:GraphSpace})

Add a new node (i.e. possible position) to the model's graph and return it. You can connect this new node with existing ones using add_edge!.

Graphs.SimpleGraphs.rem_edge!Method
rem_edge!(model::ABM{<:GraphSpace}, n, m)

Remove an edge (relationship between two positions) from the graph. Returns a boolean, true if the operation was successful.

Graphs.SimpleGraphs.rem_vertex!Method
rem_vertex!(model::ABM{<:GraphSpace}, n::Int)

Remove node (i.e. position) n from the model's graph. All agents in that node are removed from the model.

Warning: Graphs.jl (and thus Agents.jl) swaps the index of the last node with that of the one to be removed, while every other node remains as is. This means that when doing rem_vertex!(n, model) the last node becomes the n-th node while the previous n-th node (and all its edges and agents) are deleted.

Graphs.neMethod
ne(model::ABM)

Return the number of edges in the model space.

Graphs.nvMethod
nv(model::ABM)

Return the number of positions (vertices) in the model space.

Agents.@agentMacro
@agent struct YourAgentType{X}(AgentTypeToInherit) [<: OptionalSupertype]
    extra_property::X
    other_extra_property_with_default::Bool = true
    const other_extra_const_property::Int
    # etc...
end

Define an agent struct which includes all fields that AgentTypeToInherit has, as well as any additional ones the user may provide. The macro supports all syntaxes that the standard Julia mutable struct command allows for, such as const field declaration or default values for some fields. Additionally, the resulting type will always have a keyword constructor defined for it (using @kwdef). See below for examples and see also @multiagent.

Using @agent is the recommended way to create agent types for Agents.jl.

Structs created with @agent by default subtype AbstractAgent. They cannot subtype each other, as all structs created from @agent are concrete types and AgentTypeToInherit itself is also concrete (only concrete types have fields). If you want YourAgentType to subtype something other than AbstractAgent, use the optional argument OptionalSupertype (which itself must then subtype AbstractAgent).

Usage

The macro @agent has two primary uses:

  1. To include the mandatory fields for a particular space in your agent struct. In this case you would use one of the minimal agent types as AnotherAgentType.
  2. A convenient way to include fields from another, already existing struct, thereby establishing a toolkit for "type inheritance" in Julia.

The existing minimal agent types are:

which describe which fields they will contribute to the new type.

Examples

Example without optional hierarchy

Using

@agent struct Person{T}(GridAgent{2})
    age::Int
    moneyz::T
end

will create an agent appropriate for using with 2-dimensional GridSpace

mutable struct Person{T} <: AbstractAgent
    id::Int
    pos::NTuple{2, Int}
    age::Int
    moneyz::T
end

Notice that you can also use default values for some fields, in this case you will need to specify the field names with the non-default values

@agent struct Person2{T}(GridAgent{2})
    age::Int = 30
    moneyz::T
end
# default age value
Person2(id = 1, pos = (1, 1), moneyz = 2000)
# new age value
Person2(1, (1, 1), 40, 2000)

Example with optional hierarchy

An alternative way to make the above structs, that also establishes a user-specific subtyping hierarchy would be to do:

abstract type AbstractHuman <: AbstractAgent end

@agent struct Worker(GridAgent{2}) <: AbstractHuman
    age::Int
    moneyz::Float64
end

@agent struct Fisher(Worker) <: AbstractHuman
    fish_per_day::Float64
end

which would now make both Fisher and Worker subtypes of AbstractHuman.

julia> supertypes(Fisher)
(Fisher, AbstractHuman, AbstractAgent, Any)

julia> supertypes(Worker)
(Worker, AbstractHuman, AbstractAgent, Any)

Note that Fisher will not be a subtype of Worker although Fisher has inherited the fields from Worker.

Example highlighting problems with parametric types

Notice that in Julia parametric types are union types. Hence, the following cannot be used:

@agent struct Dummy{T}(GridAgent{2})
    moneyz::T
end

@agent struct Fisherino{T}(Dummy{T})
    fish_per_day::T
end

You will get an error in the definition of Fisherino, because the fields of Dummy{T} cannot be obtained, because it is a union type. Same with using Dummy. You can only use Dummy{Float64}.

Example with common dispatch and no subtyping

It may be that you do not even need to create a subtyping relation if you want to utilize multiple dispatch. Consider the example:

@agent struct CommonTraits(GridAgent{2})
    age::Int
    speed::Int
    energy::Int
end

and then two more structs are made from these traits:

@agent struct Bird(CommonTraits)
    height::Float64
end

@agent struct Rabbit(CommonTraits)
    underground::Bool
end

If you wanted a function that dispatches to both Rabbit, Bird, you only have to define:

Animal = Union{Bird, Rabbit}
f(x::Animal) = ... # uses `CommonTraits` fields

However, it should also be said, that there is no real reason here to explicitly type-annotate x::Animal in f. Don't annotate any type. Annotating a type only becomes useful if there are at least two "abstract" groups, like Animal, Person. Then it would make sense to define

Person = Union{Fisher, Baker}
f(x::Animal) = ... # uses `CommonTraits` fields
f(x::Person) = ... # uses fields that all "persons" have

Agents.jl has a convenience function add_agent! to create and add agents to the model automatically. In the case you want to create some agents by yourself you can use a constructor accepting the model as first argument so that internal fields, such as the id, are set automatically

model = StandardABM(GridAgent{2}, GridSpace((10,10)))
a = GridAgent{2}(model, (3,4)) # the id is set automatically
Agents.@dispatchMacro
@dispatch f(args...)

A macro to enable multiple-dispatch-like behavior for the function f, for various agent kinds generated via the @multiagent macro. For an illustration of its usage see the Tutorial.

Agents.@multiagentMacro
@multiagent struct YourAgentType{X,Y}(AgentTypeToInherit) [<: OptionalSupertype]
    @subagent FirstAgentSubType{X}
        first_property::X # shared with second agent
        second_property_with_default::Bool = true
    end
    @subagent SecondAgentSubType{X,Y}
        first_property::X = 3
        third_property::Y
    end
    # etc...
end

Define multiple agent "subtypes", which are actually only variants of a unique overarching type YourAgentType. This means that all "subtypes" are conceptual: they are simply convenience functions defined that initialize the common proper type correctly (see examples below for more). Because the "subtypes" are not real Julia Types, you cannot use multiple dispatch on them. You also cannot distinguish them on the basis of typeof, but need to use instead the kindof function. That is why these "types" are often referred to as "kinds" in the documentation. See also the allkinds function for a convenient way to obtain all kinds.

See the Tutorial or the performance comparison versus Union types for why in most cases it is better to use @multiagent than making multiple agent types manually. See @dispatch (also highlighted in the Tutorial) for a multiple-dispatch-like syntax to use with @multiagent.

Two different versions of @multiagent can be used by passing either :opt_speed or :opt_memory as the first argument (before the struct keyword). The first optimizes the agents representation for speed, the second does the same for memory, at the cost of a moderate drop in performance. By default it uses :opt_speed.

Examples

Let's say you have this definition:

@multiagent :opt_speed struct Animal{T}(GridAgent{2})
    @subagent struct Wolf
        energy::Float64 = 0.5
        ground_speed::Float64
        const fur_color::Symbol
    end
    @subagent struct Hawk{T}
        energy::Float64 = 0.1
        ground_speed::Float64
        flight_speed::T
    end
end

Then you can create Wolf and Hawk agents normally, like so

hawk_1 = Hawk(1, (1, 1), 1.0, 2.0, 3)
hawk_2 = Hawk(; id = 2, pos = (1, 2), ground_speed = 2.3, flight_speed = 2)
wolf_1 = Wolf(3, (2, 2), 2.0, 3.0, :black)
wolf_2 = Wolf(; id = 4, pos = (2, 1), ground_speed = 2.0, fur_color = :white)

It is important to notice, though, that the Wolf and Hawk types are just conceptual and all agents are actually of type Animal in this case. The way to retrieve the variant of the agent is through the function kindof e.g.

kindof(hawk_1) # :Hawk
kindof(wolf_2) # :Wolf

See the rabbitfoxhawk example to see how to use this macro in a model.

Current limitations

  • Impossibility to inherit from a compactified agent.
Agents.PathfindingModule
Pathfinding

Submodule containing functionality for path-finding based on the A* algorithm. Currently available for GridSpace and ContinuousSpace. Discretization of ContinuousSpace is taken care of internally.

You can enable path-finding and set its options by creating an instance of a Pathfinding.AStar struct. This must be passed to the relevant pathfinding functions during the simulation. Call plan_route! to set the destination for an agent. This triggers the algorithm to calculate a path from the agent's current position to the one specified. You can alternatively use plan_best_route! to choose the best target from a list. Once a target has been set, you can move an agent one step along its precalculated path using the move_along_route! function.

Refer to the Maze Solver, Mountain Runners and Rabbit, Fox, Hawk examples using path-finding and see the available functions below as well.

Agents.Pathfinding.AStarMethod
Pathfinding.AStar(space; kwargs...)

Enables pathfinding for agents in the provided space (which can be a GridSpace or ContinuousSpace) using the A* algorithm. This struct must be passed into any pathfinding functions.

For ContinuousSpace, a walkmap or instance of PenaltyMap must be provided to specify the level of discretisation of the space.

Keywords

  • diagonal_movement = true specifies if movement can be to diagonal neighbors of a tile, or only orthogonal neighbors. Only available for GridSpace
  • admissibility = 0.0 allows the algorithm to approximate paths to speed up pathfinding. A value of admissibility allows paths with at most (1+admissibility) times the optimal length.
  • walkmap = trues(spacesize(space)) specifies the (un)walkable positions of the space. If specified, it should be a BitArray of the same size as the corresponding GridSpace. By default, agents can walk anywhere in the space.
  • cost_metric = DirectDistance{D}() is an instance of a cost metric and specifies the metric used to approximate the distance between any two points.

Utilization of all features of AStar occurs in the 3D Mixed-Agent Ecosystem with Pathfinding example.

Agents.Pathfinding.CostMetricType
Pathfinding.CostMetric{D}

An abstract type representing a metric that measures the approximate cost of travelling between two points in a D dimensional grid.

Agents.Pathfinding.DirectDistanceMethod
Pathfinding.DirectDistance{D}([direction_costs::Vector{Int}]) <: CostMetric{D}

Distance is approximated as the shortest path between the two points, provided the walkable property of Pathfinding.AStar allows. Optionally provide a Vector{Int} that represents the cost of going from a tile to the neighboring tile on the i dimensional diagonal (default is 10√i).

If diagonal_movement=false in Pathfinding.AStar, neighbors in diagonal positions will be excluded. Cost defaults to the first value of the provided vector.

Agents.Pathfinding.MaxDistanceType
Pathfinding.MaxDistance{D}() <: CostMetric{D}

Distance between two tiles is approximated as the maximum of absolute difference in coordinates between them.

Agents.Pathfinding.PathType
Path{D,T}

Alias of MutableLinkedList{NTuple{D,T}}. Used to represent the path to be taken by an agent in a D dimensional space.

Agents.Pathfinding.PenaltyMapMethod
Pathfinding.PenaltyMap(pmap::Array{Int,D} [, base_metric::CostMetric]) <: CostMetric{D}

Distance between two positions is the sum of the shortest distance between them and the absolute difference in penalty.

A penalty map (pmap) is required. For pathfinding in GridSpace, this should be the same dimensions as the space. For pathfinding in ContinuousSpace, the size of this map determines the granularity of the underlying grid, and should agree with the size of the walkable map.

Distance is calculated using Pathfinding.DirectDistance by default, and can be changed by specifying base_metric.

An example usage can be found in Mountain Runners.

Agents.Pathfinding.delta_costMethod
Pathfinding.delta_cost(pathfinder::GridPathfinder{D}, metric::M, from, to) where {M<:CostMetric}

Calculate an approximation for the cost of travelling from from to to (both of type NTuple{N,Int}. Expects a return value of Float64.

Agents.Pathfinding.find_continuous_pathMethod
find_continuous_path(pathfinder, from, to)

Functions like find_path, but uses the output of find_path and converts it to the coordinate space used by the corresponding ContinuousSpace. Performs checks on the last two waypoints in the discrete path to ensure continuous path is optimal.

Agents.Pathfinding.find_pathMethod
find_path(pathfinder::AStar{D}, from::NTuple{D,Int}, to::NTuple{D,Int})

Calculate the shortest path from from to to using the A* algorithm. If a path does not exist between the given positions, an empty linked list is returned.

Agents.Pathfinding.nearby_walkableMethod
Pathfinding.nearby_walkable(position, model::ABM{<:GridSpace{D}}, pathfinder::AStar{D}, r = 1)

Return an iterator over all nearby_positions within "radius" r of the given position (excluding position), which are walkable as specified by the given pathfinder.

Agents.Pathfinding.penaltymapMethod
Pathfinding.penaltymap(pathfinder)

Return the penalty map of a Pathfinding.AStar if the Pathfinding.PenaltyMap metric is in use, nothing otherwise.

It is possible to mutate the map directly, for example Pathfinding.penaltymap(pathfinder)[15, 40] = 115 or Pathfinding.penaltymap(pathfinder) .= rand(50, 50). If this is mutated, a new path needs to be planned using plan_route!.

Agents.Pathfinding.position_deltaMethod
Pathfinding.position_delta(pathfinder::AStar{D}, from::NTuple{Int,D}, to::NTuple{Int,D})

Returns the absolute difference in coordinates between from and to taking into account periodicity of pathfinder.

Agents.Pathfinding.random_walkableMethod
Pathfinding.random_walkable(model, pathfinder::AStar{D})

Return a random position in the given model that is walkable as specified by the given pathfinder.

Agents.Pathfinding.random_walkableMethod
Pathfinding.random_walkable(pos, model::ABM{<:ContinuousSpace{D}}, pathfinder::AStar{D}, r = 1.0)

Return a random position within radius r of pos which is walkable, as specified by pathfinder. Return pos if no such position exists.

Agents.move_along_route!Method
move_along_route!(agent, model::ABM{<:ContinuousSpace{D}}, pathfinder::AStar{D}, speed, dt = 1.0)

Move agent for one step along the route toward its target set by plan_route! at the given speed and timestep dt.

For pathfinding in models with ContinuousSpace

If the agent does not have a precalculated path or the path is empty, it remains stationary.

Agents.move_along_route!Method
move_along_route!(agent, model::ABM{<:GridSpace{D}}, pathfinder::AStar{D})

Move agent for one step along the route toward its target set by plan_route!

For pathfinding in models with GridSpace.

If the agent does not have a precalculated path or the path is empty, it remains stationary.

Agents.plan_best_route!Method
plan_best_route!(agent, dests, pathfinder::AStar{D}; kwargs...)

Calculate, store, and return the best path to move the agent from its current position to a chosen destination taken from dests using pathfinder.

The condition = :shortest keyword returns the shortest path which is shortest out of the possible destinations. Alternatively, the :longest path may also be requested.

Return the position of the chosen destination. Return nothing if none of the supplied destinations are reachable.

Agents.plan_route!Method
plan_route!(agent, dest, pathfinder::AStar{D})

Calculate and store the shortest path to move the agent from its current position to dest (a position e.g. (1, 5) or (1.3, 5.2)) using the provided pathfinder.

Use this method in conjunction with move_along_route!.

Agents.remove_agent!Method
Pathfinding.remove_agent!(agent, model, pathfinder)

The same as remove_agent!(agent, model), but also removes the agent's path data from pathfinder.