aa2int(seq::String[])

Given a vector of string amino-acid sequences, converts it to an integer matrix.

aa2int(seq::String)

Convert a string amino-acid sequence to a vector of integers.

aa2int(char)

Amino-acid one-letter code to integer (1 to 21, with gap = 21).

alphabet_aa()

Returns the alphabet of amino-acid letters.

alphabet_dna()

Returns the alphabet of amino-acid letters.

dna2int(seq::String[])

Given a vector of string DNA sequences, converts it to an integer matrix.

dna2int(seq::String)

Convert a string DNA sequence to a vector of integers.

dna2int(char)

DNA one-letter code to integer (1 to 5, with gap = 5).

int2aa(i)

Get the amino acid (in one letter code) corresponding to the integer i.

int2dna(i)

Get the amino acid (in one letter code) corresponding to the integer i.