GenomicFeatures

Description

The GenomicFeatures package provides utilities for working with interval based genomic annotations. It builds on IntervalTrees to provide a data-structures and algorithms for various formats such as BED, GFF3, bigWig and bigBed.

Installation

Releases of GenomicFeatures version 2.0.0 and above are registered and made available to install through BioJulia's package registry. By default, Julia's package manager only uses the "General" package registry.

To add the BioJulia registry from the Julia REPL, press ] to enter pkg mode, then enter the following command:

registry add https://github.com/BioJulia/BioJuliaRegistry.git

After adding the registry to your configuration, you can install GenomicFeatures while in pkg mode with the following:

add GenomicFeatures

If you are interested in the cutting edge of the development, please check out the develop branch to try new features before release.

Testing

GenomicFeatures is tested against Julia 1.X on Linux, OS X, and Windows.

Latest build status:

Contributing

We appreciate contributions from users including reporting bugs, fixing issues, improving performance and adding new features.

Take a look at the contributing files detailed contributor and maintainer guidelines, and code of conduct.

Financial contributions

We also welcome financial contributions in full transparency on our open collective. Anyone can file an expense. If the expense makes sense for the development of the community, it will be "merged" in the ledger of our open collective by the core contributors and the person who filed the expense will be reimbursed.

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Questions?

If you have a question about contributing or using BioJulia software, come on over and chat to us on Gitter, or you can try the Bio category of the Julia discourse site.