Microstructure.jl
Microstructure.jl is a Julia toolbox aiming at fast and probabilistic microstructure imaging. It supports flexible and extendable compartment modelling with diffusion MRI and combined diffusion-relaxometry MRI.
Installation
To install Microstructure.jl, use the Julia package manager:
julia> using Pkg
julia> add Microstructrue
or use github link to keep up to date:
julia> using Pkg
julia> add https://github.com/Tinggong/Microstructure.jl.git
Feature Summary
- combined diffusion-relaxometry compartment modelling
- flexible in creating models and adjusting assumptions
- generic mcmc estimator
- parallel computing
- quality checking
Relationship to Other Packages
Microstructure.jl focuses on tissue microstructure estimation. If you are also interested in fiber orientation and tractography, please check out FreeSurfer.jl. Microstructure.jl also uses I/O functions from FreeSurfer.jl for reading and writing mri image files.