Microstructure.jl

Microstructure.jl is a Julia toolbox aiming at fast and probabilistic microstructure imaging. It supports flexible and extendable compartment modelling with diffusion MRI and combined diffusion-relaxometry MRI.

Installation

To install Microstructure.jl, use the Julia package manager:

julia> using Pkg
julia> add Microstructrue

or use github link to keep up to date:

julia> using Pkg
julia> add https://github.com/Tinggong/Microstructure.jl.git

Feature Summary

  • combined diffusion-relaxometry compartment modelling
  • flexible in creating models and adjusting assumptions
  • generic mcmc estimator
  • parallel computing
  • quality checking

Relationship to Other Packages

Microstructure.jl focuses on tissue microstructure estimation. If you are also interested in fiber orientation and tractography, please check out FreeSurfer.jl. Microstructure.jl also uses I/O functions from FreeSurfer.jl for reading and writing mri image files.

Citation