COBREXA Tutorials

• Loading and converting model data
• Loading models from files
• Converting to other model types
• Basic analysis of constraint-based models
• Optimization problem solvers
• Flux balance analysis
• Flux variability analysis
• Parsimonious flux balance analysis
• Flux sampling
• Distributed processing and HPC environments
• Starting the distributed workers
• Running a distributed analysis
• Interacting with HPC schedulers
• Wrapping your script in a Slurm job
• Modifying and saving the models
• Manual modifications
• Analysis modifiers
• Exporting the modified models in native formats
• Using Serialization for quick & efficient model storage