Connected components

attracting_components(g)

Return a vector of vectors of integers representing lists of attracting components in the directed graph g.

The attracting components are a subset of the strongly connected components in which the components do not have any leaving edges.

Examples

julia> g = SimpleDiGraph([0 1 0 0 0; 0 0 1 0 0; 1 0 0 1 0; 0 0 0 0 1; 0 0 0 1 0])
{5, 6} directed simple Int64 graph

julia> strongly_connected_components(g)
2-element Array{Array{Int64,1},1}:
 [4, 5]
 [1, 2, 3]

julia> attracting_components(g)
1-element Array{Array{Int64,1},1}:
 [4, 5]

components(labels)

Given a vector of component labels, return a vector of vectors representing the vertices associated with a given component id.

components_dict(labels)

Convert an array of labels to a map of component id to vertices, and return a map with each key corresponding to a given component id and each value containing the vertices associated with that component.

condensation(g[, scc])

Return the condensation graph of the strongly connected components scc in the directed graph g. If scc is missing, generate the strongly connected components first.

Examples

julia> g = SimpleDiGraph([0 1 0 0 0; 0 0 1 0 0; 1 0 0 1 0; 0 0 0 0 1; 0 0 0 1 0])
{5, 6} directed simple Int64 graph

julia> strongly_connected_components(g)
2-element Array{Array{Int64,1},1}:
 [4, 5]
 [1, 2, 3]

julia> foreach(println, edges(condensation(g)))
Edge 2 => 1

connected_components!(label, g)

Fill label with the id of the connected component in the undirected graph g to which it belongs. Return a vector representing the component assigned to each vertex. The component value is the smallest vertex ID in the component.

Performance

This algorithm is linear in the number of edges of the graph.

connected_components(g)

Return the connected components of an undirected graph g as a vector of components, with each element a vector of vertices belonging to the component.

For directed graphs, see strongly_connected_components and weakly_connected_components.

Examples

julia> g = SimpleGraph([0 1 0; 1 0 1; 0 1 0]);

julia> connected_components(g)
1-element Array{Array{Int64,1},1}:
 [1, 2, 3]

julia> g = SimpleGraph([0 1 0 0 0; 1 0 1 0 0; 0 1 0 0 0; 0 0 0 0 1; 0 0 0 1 0]);

julia> connected_components(g)
2-element Array{Array{Int64,1},1}:
 [1, 2, 3]
 [4, 5]

is_connected(g)

Return true if graph g is connected. For directed graphs, return true if graph g is weakly connected.

Examples

julia> g = SimpleGraph([0 1 0; 1 0 1; 0 1 0]);

julia> is_connected(g)
true

julia> g = SimpleGraph([0 1 0 0 0; 1 0 1 0 0; 0 1 0 0 0; 0 0 0 0 1; 0 0 0 1 0]);

julia> is_connected(g)
false

julia> g = SimpleDiGraph([0 1 0; 0 0 1; 1 0 0]);

julia> is_connected(g)
true

is_strongly_connected(g)

Return true if directed graph g is strongly connected.

Examples

julia> g = SimpleDiGraph([0 1 0; 0 0 1; 1 0 0]);

julia> is_strongly_connected(g)
true

is_weakly_connected(g)

Return true if the graph g is weakly connected. If g is undirected, this function is equivalent to is_connected(g).

Examples

julia> g = SimpleDiGraph([0 1 0; 0 0 1; 1 0 0]);

julia> is_weakly_connected(g)
true

julia> g = SimpleDiGraph([0 1 0; 1 0 1; 0 0 0]);

julia> is_connected(g)
true

julia> is_strongly_connected(g)
false

julia> is_weakly_connected(g)
true

isgraphical(degs)

Return true if the degree sequence degs is graphical. A sequence of integers is called graphical, if there exists a graph where the degrees of its vertices form that same sequence.

Performance

Time complexity: $\mathcal{O}(|degs|*\log(|degs|))$.

Implementation Notes

According to Erdös-Gallai theorem, a degree sequence $\{d_1, ...,d_n\}$ (sorted in descending order) is graphic iff the sum of vertex degrees is even and the sequence obeys the property -

\[\sum_{i=1}^{r} d_i \leq r(r-1) + \sum_{i=r+1}^n min(r,d_i)\]

for each integer r <= n-1

neighborhood(g, v, d, distmx=weights(g))

Return a vector of each vertex in g at a geodesic distance less than or equal to d, where distances may be specified by distmx.

Optional Arguments

• dir=:out: If g is directed, this argument specifies the edge direction

with respect to v of the edges to be considered. Possible values: :in or :out.

Examples

julia> g = SimpleDiGraph([0 1 0 0 0; 0 0 1 0 0; 1 0 0 1 0; 0 0 0 0 1; 0 0 0 1 0]);

julia> neighborhood(g, 1, 2)
3-element Array{Int64,1}:
 1
 2
 3

julia> neighborhood(g, 1, 3)
4-element Array{Int64,1}:
 1
 2
 3
 4

julia> neighborhood(g, 1, 3, [0 1 0 0 0; 0 0 1 0 0; 1 0 0 0.25 0; 0 0 0 0 0.25; 0 0 0 0.25 0])
5-element Array{Int64,1}:
 1
 2
 3
 4
 5

neighborhood_dists(g, v, d, distmx=weights(g))

Return a a vector of tuples representing each vertex which is at a geodesic distance less than or equal to d, along with its distance from v. Non-negative distances may be specified by distmx.

Optional Arguments

• dir=:out: If g is directed, this argument specifies the edge direction

with respect to v of the edges to be considered. Possible values: :in or :out.

Examples

julia> g = SimpleDiGraph([0 1 0 0 0; 0 0 1 0 0; 1 0 0 1 0; 0 0 0 0 1; 0 0 0 1 0]);

julia> neighborhood_dists(g, 1, 3)
4-element Array{Tuple{Int64,Int64},1}:
 (1, 0)
 (2, 1)
 (3, 2)
 (4, 3)

julia> neighborhood_dists(g, 1, 3, [0 1 0 0 0; 0 0 1 0 0; 1 0 0 0.25 0; 0 0 0 0 0.25; 0 0 0 0.25 0])
5-element Array{Tuple{Int64,Float64},1}:
 (1, 0.0)
 (2, 1.0)
 (3, 2.0)
 (4, 2.25)
 (5, 2.5)

julia> neighborhood_dists(g, 4, 3)
2-element Array{Tuple{Int64,Int64},1}:
 (4, 0)
 (5, 1)

julia> neighborhood_dists(g, 4, 3, dir=:in)
5-element Array{Tuple{Int64,Int64},1}:
 (4, 0)
 (3, 1)
 (5, 1)
 (2, 2)
 (1, 3)

period(g)

Return the (common) period for all vertices in a strongly connected directed graph. Will throw an error if the graph is not strongly connected.

Examples

julia> g = SimpleDiGraph([0 1 0; 0 0 1; 1 0 0]);

julia> period(g)
3

strongly_connected_components(g)

Compute the strongly connected components of a directed graph g.

Return an array of arrays, each of which is the entire connected component.

Implementation Notes

The order of the components is not part of the API contract.

Examples

julia> g = SimpleDiGraph([0 1 0; 1 0 1; 0 0 0]);

julia> strongly_connected_components(g)
2-element Array{Array{Int64,1},1}:
 [3]
 [1, 2]


julia> g=SimpleDiGraph(11)
{11, 0} directed simple Int64 graph

julia> edge_list=[(1,2),(2,3),(3,4),(4,1),(3,5),(5,6),(6,7),(7,5),(5,8),(8,9),(9,8),(10,11),(11,10)];

julia> g = SimpleDiGraph(Edge.(edge_list))
{11, 13} directed simple Int64 graph

julia> strongly_connected_components(g)
4-element Array{Array{Int64,1},1}:
 [8, 9]
 [5, 6, 7]
 [1, 2, 3, 4]
 [10, 11]

strongly_connected_components_kosaraju(g)

Compute the strongly connected components of a directed graph g using Kosaraju's Algorithm. (https://en.wikipedia.org/wiki/Kosaraju%27s_algorithm).

Return an array of arrays, each of which is the entire connected component.

Performance

Time Complexity : O(|E|+|V|) Space Complexity : O(|V|) {Excluding the memory required for storing graph}

|V| = Number of vertices |E| = Number of edges

Examples

julia> g=SimpleDiGraph(3)
{3, 0} directed simple Int64 graph

julia> g = SimpleDiGraph([0 1 0 ; 0 0 1; 0 0 0])
{3, 2} directed simple Int64 graph

julia> strongly_connected_components_kosaraju(g)
3-element Array{Array{Int64,1},1}:
 [1]
 [2]
 [3]


julia> g=SimpleDiGraph(11)
{11, 0} directed simple Int64 graph

julia> edge_list=[(1,2),(2,3),(3,4),(4,1),(3,5),(5,6),(6,7),(7,5),(5,8),(8,9),(9,8),(10,11),(11,10)]
13-element Array{Tuple{Int64,Int64},1}:
 (1, 2)
 (2, 3)
 (3, 4)
 (4, 1)
 (3, 5)
 (5, 6)
 (6, 7)
 (7, 5)
 (5, 8)
 (8, 9)
 (9, 8)
 (10, 11)
 (11, 10)

julia> g = SimpleDiGraph(Edge.(edge_list))
{11, 13} directed simple Int64 graph

julia> strongly_connected_components_kosaraju(g)
4-element Array{Array{Int64,1},1}:
 [11, 10]
 [2, 3, 4, 1]
 [6, 7, 5]
 [9, 8]

weakly_connected_components(g)

Return the weakly connected components of the graph g. This is equivalent to the connected components of the undirected equivalent of g. For undirected graphs this is equivalent to the connected_components of g.

Examples

julia> g = SimpleDiGraph([0 1 0; 1 0 1; 0 0 0]);

julia> weakly_connected_components(g)
1-element Array{Array{Int64,1},1}:
 [1, 2, 3]